315 Works

Supplementary Table 13

Charles Feigin
Canid (Canindae, Caninae) positively selected genes

Neisseria gonorrhoeae SAMN04875541 reads

RYAN WICK
This is a sample read set for use in Unicycler. It is linked to in the Unicycler README so people who install Unicycler can get a small read set to make sure the program works.
The files contain Illumina and PacBio reads from Neisseria gonorrhoeae biosample SAMN04875541. The SRA run accessions are SRR4272052 and SRR4272053. These files do not contain the full set of reads from these run. Rather, they have been subsampled down to create...

Microstructural and mechanical modelling of multiphase materials: a case study on copper-infiltrated Tungsten (W-Cu) composites

PAUL MIGNONE
W-Cu is a candidate material for ultra-high temperature applications; however, little is understood about how its microstructure influences performance under mechanical loading. This is due to difficulties in capturing and digitising the microstructure due to the dense Tungsten matrix. This thesis presents both experimental and analytical methods to obtain a W-Cu microstructure for finite element analysis. The thesis also determines the correct representative volume of W-Cu for mechanical simulations, as well as the effect of...

Soil-atmosphere methane exchange data for AU-WOM and AU-WRR with soil environmental variables

BENEDIKT FEST
Data measured with automated soil greenhouse gas monitoring system at AU-WOM (Wombat State forest, Victoria Australia) and AU-WRR (Warra LTER, Tasmania, Australia) in 2010 and 2011. Includes QCed time series of single chamber data and associated soil volumetric moisture and soil temperature data.

Establishing the key determinants of effective teaching: a systematic review

JANET CLINTON, MYRA KOELLE & RUTH ASTON
The Commonwealth Department of Education and Training contracted the Centre for Program Evaluation at the University of Melbourne to conduct a systematic review of the key determinants of effective teaching, this report presents the findings of this review and presents recommendations for the use of these review findings in the context of teacher evaluation and professionalisation in Australia. A systematic review of academic, grey, and policy documents that identify teacher quality characteristics and how they...

Morrongiello etal 2019 Journal of Animal Ecology- purple wrasse otolith increments.csv

JOHN MORRONGIELLO
increment measurements and biological data associated with Morrongiello etal 2019 publication in Journal of Animal Ecology titled 'Fishing constrains phenotype responses of marine fish to climate variability'

blue angel

PETER ALSOP
By slowing and isolating the movements of a dancer 'blue angel' creates new sequences that form then reveal an inseparable relationship between motion and sound. It integrates causal relationships between image and sound as the fundamental composition process of the work, and through being based on stringent formal associations, multi-layered sonic and visual images arise. Simple computer based audio and visual integrating and rendering tools, designed by the artist, created blue angel, and these can...

Resolutions of x-ray and neutron tomographic techniques.

PAUL MIGNONE
An image highlighting the resolution scales of X-ray and neutron micro-tomography.

Unicycler (v0.4.0) assemblies (hybrid Illumina and ONT)

RYAN WICK
Unicycler assemblies of 12 isolates of Klebsiella pneumoniae, generated with both Illumina and ONT reads.

Adler Book: Chapter on Leptospiral Genomics: Archive Containing Nullarbor Reports, Excel Spreadsheet version of Tables

DIETER BULACH
Archive contains the Nullarbor reports (https://github.com/tseemann/nullarbor) used to produce Figures 1 to 7 in the Leptospiral Genomics Chapter

Archive contains seven folders**(After decompressing) to view the Nullarbor Report open the 'index.html' file in your web browser**
Spreadsheet: Tables 1 to 6

Compressive strength dataset of foamed/normal concrete for prediction model

TUAN NGUYEN & TUAN NGO
The information on the concrete dataset is as follows:1. The Dataset 1 contains 177 samples of foamed concrete. References: Given in the excel file.
2. The Dataset 1A contains 34 samples of foamed concrete from the laboratory.3. The Dataset 2 contains 1133 samples of high performance concrete.
The codes of machine learning models (e.g. HO-DNN, SO-ANN, and so on) are available upon request.Please send emails to tuan.nguyen@unimelb.edu.au
References:1. Nguyen T, Kashani A, Ngo T, Bordas S. Deep neural...

Mining Google Street View]{Mining Google Street View for Urban Climate Micro-Climate Human Thermal Comfort Modelling Parameters

KERRY NICE, JASPER WIJNANDS, JASON THOMPSON, GIDEON ASCHWANDEN & MARK STEVENSON
Conference presentation for ICUC10, 10th International Conference on Urban Climate/ 14th Symposium on the Urban Environment, 6-10 August 2018, New York, NY.

Deepbinner: WGS set basecalled reads

RYAN WICK
These are the basecalled (FASTQ format) reads for the WGS test set used in the Deepbinner manuscript.

Kujala et al (2018) Not all data are equal: Influence of data type and amount in spatial conservation prioritisation - Data

HEINI KUJALA, JOSE LAHOZ-MONFORT, Jane Elith & Atte Moilanen
Data for Kujala et al (2018) Not all data are equal: Influence of data type and amount in spatial conservation prioritisation. Methods in Ecology and Evolution, 9(11): 2249-2261.
https://doi.org/10.1111/2041-210X.13084

Tables gives simulation results where 1) new species is added to a prioritisation done without ("_BD_n20_") or with costs ("_cost_n20_"); 2) landscape condition is accounted for but it affects onpy p-proportion of the species; and 3) condition layer is changed by x%. Table headings correspond to:

n_B =...

Architecture Diversity: A Container On a Virtual Machine On an HPC?

LEV LAFAYETTE
The Spartan HPC system at the University of Melbourne is an example of heterogeneous architecture. Heterogeneous architecture is necessary for different high throughput processing, and these can be applied within the same coupled-system. Concrete performance (throughput) is more important than abstract performance.

Updated gene content PCA files (zipped directory)

KELLY WYRES
Updated data files for pan-genome and phage gene content PCAs. These files contain data for 463 and 210 PCs, respectively.
These data are described in Wyres et al "Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae."

Source code for GUGPS dataset

Yuerong Zhou, Alvin Christopher Galang Varquez & Manabu Kanda
This is the source code for developing the GUGPS (Global urban growth projection using SLEUTH urban growth model) published at Scientific Data. Please read the README.docx file inside carefully prior to use.
The code consists of two R programming language scripts (version R 3.4.3; https://www.r-project.org/), which prepare simulation inputs and integrate outputs. The script is internally documented to assist understanding and customisation for further use.We have also shared the modified SLEUTH model, as well as...

High-resolution global urban growth projection based on multiple applications of the SLEUTH urban growth model

Yuerong Zhou, Alvin Christopher Galang Varquez & Manabu Kanda
This is the GUGPS dataset (Global urban growth projection using SLEUTH urban growth model) published at Scientific Data. Please read the README.docx file inside carefully prior to use.

812 simulated expression datasets for differential co-expression analysis

Dharmesh Dinesh Bhuva, Melissa J. Davis & JOSEPH CURSONS
Simulated expression data with knock-outs Description A dataset containing simulated expression dataset. Data is simulated using a dynamical systems model from a network sampled from the S. Cerevisiae regulatory network. The dataset is a list containing the results from the simulation, and other information generated subsequently. Format A named list with 14 elements: simitra numeric, indicating the iteration of the simulation (a total of 1000 were performed and 812 converged) scoresan S4 Matrix, containing vectorised...

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