73 Works

Docking human karyopherin to the Reston Ebola VP24 using Zaire Ebola VP24 as template using DOCLASP

Sandeep Chakraborty, Basuthkar Rao, Bjarni Asgeirsson & Abhaya Dandekar
4D9OA4U2XA.pdb: PDB structures for the VP24 protein in Reston Ebola virus (PDBid:4D9OA) with with human karyopherin (KPNA; PDBid:4U2XD) docked, based on the Zaire Ebola virus (PDBid:4U2XA) as template. dockingKPNAtoRestonVP24.p1m: PyMol script used to dock KPNA to the modelled structure of Reston Ebola virus. 4U2XA.4U2XD.maxdist.out.sort: list of closest atoms of the residues of VP24 (PDBid:4U2XA) that make contact with KPNA (PDBid:4U2XD), sorted based on distances.

Fourier transform infrared photolysis difference spectra of CO- and NO-ligated inducible nitric oxide synthase

Michael Horn, Karin Nienhaus & Gerd Ulrich Nienhaus
Detailed information on the dataset can be found in the text file "Raw data legend".

Data for signal transduction mechanism of GraSR in Staphylococcus aureus

Uzma Muzamal, Daniel Gomez, Fenika Kapadia & Dasantila Golemi-Kotra
Files containing the CD data for GraS, GraR and its different constructs, GraX and BceR (Fig. 11) are provided. The averaged raw data for Fig. 2b that were used to calculate the rate constant for phosphorylation are also provided.

Data from manipulative experiment to assess community effects of dogwhelk manipulation (addition of 10 dogwhelks to each of 5 x ~1.5 x 1.5 x 1.5 m boulders) or periwinkle manipulation (addition of 10 periwinkles to 5 different, but similar sized boulders).

Richard Stafford & Rachel Williams
‘Before’ values are before manipulations, ‘after’ values are after 3 week period. Additional columns for dogwhelks and periwinkles indicate values immediately after manipulation and should equal ‘before’ values + 10 for the manipulated boulders. Treatment codes (final column) DW = dogwhelk manipulation, LL = periwinkle (Littorina littorea) manipulation, C = control

Baseline characteristics, clinical presentation, treatment and outcome of 65 cancer or SCT patients

Maria Cecilia Dignani, Patricia Costantini, Claudia Salgueira, Rosana Jordán, Graciela Guerrini, Alejandra Valledor, Fabián Herrera, Andrea Nenna, Claudia Mora, Inés Roccia-Rossi, Daniel Stecher, Edith Carbone, Ana Laborde, Ernesto Efron, Javier Altclas, Aníbal Calmaggi & José Cozzi
Acronyms: SCT: Stem cell transplantation; GVHD: Graft vs Host Disease; Chemo: chemotherapy; IS: Immunosuppression; URTI: Upper Respiratory Tract Infection; NFW: nasopharyngeal washing; BAL: Bronchi-alveolar Lavage; IFD: Indirect Immunofluorescence Assay; Chest CT: Chest Computed Tomography; HD: Hodgkin Disease; ALL: Acute Lymphoblastic Leukemia; CLL: Chronic Lymphoblastic Leukemia; MM: Multiple Myeloma; AML: Acute Myeloid Leukemia; CML: Chronic Myeloid Leukemia

Peak areas of MRM transitions in PANDA and DASP sample set

Wenbo Zhi, Sharad Purohit, Shan Bai, Ashok Sharma & Jin-Xiong She
AbN represents autoantibody negative control group in PANDA sample cohort; T1D denotes type 1 diabetes patients in PANDA cohort; DASP_B_Control is control group in DASP blind sample set; DASP_B_Patient is T1D patient group in DASP blind sample set; DASP_V_Control is control group in DASP verification sample set; DASP_V_Patient is T1D patient group in DASP verification sample set; Plate # indicates the # of storage plate the sample locates for PANDA samples; IS column is the...

Mean voltages of the event-related brain potentials elicited by the IAPS stimuli.

Sheila Bouten & J. Bruno Debruille
This Excel file includes, in each cell, the mean voltage of the ERPs of one participant (lines: sub2 to sub38), for one electrode site (columns C3 to TP8) for one of the four 32 experimental conditions (SBd to SBs, that is, same&believe-different, to same&believe – same).

Version 2. Manually annotated miRNA-disease and miRNA-gene interaction corpora

Shweta Bagewadi, Tamara Bobić, Martin Hofmann-Apitius, Juliane Fluck & Roman Klinger
Please see README.txt in the zip file for precise details about the corpus and supplementary files. The updated zip file contains new files (Permutation_terms.txt, Non-Specific_miRNAs_Dictionary.txt and Word_variations.txt) and Table A has been updated

Raw data of Borrelia spirochetes in human vaginal and seminal secretions

Marianne J. Middelveen, Jennie Burke, Eva Sapi, Cheryl Bandoski, Katherine R. Filush, Yean Wang, Agustin Franco, Arun Timmaraju, Hilary A. Schlinger, Peter J. Mayne & Raphael B. Stricker
The dataset contains data files 1, 2, 3, 4, 5, 5a, 6 and 7. Detailed legends for each files can be found in the text file provided.

Fluorescence reporter assay data with assessing binding of insect repellents to the yellow fever mosquito (Culex quinquefasciatus) odorant binding protein AaegOBP1

Gabriel M. Leal & Walter S. Leal
Fluorescence reporter was N-phenyl-1-naphthylamine (NPN). Insect repellents used were DEET, PMD, Picaridin and IR3535. Mosquito oviposition pheromone was used as a positive control. Please see ReadMe file for details regarding each file. Please see the associated article for methods.

Data used for retrospective analysis of the effects of levosimendan for cardiogenic shock

Fayçal Janen, Khaoula El Arayedh, Iheb Labbene, Chihebeddine Romdhani & Mustapha Ferjani
Data was collected at the ICU in the Military Hospital of Tunis between Jan 2004 and Dec 2009, and between Jan 2011 and Dec 2013. PAM: Mean Arterial Pressure (mm Hg); HR: Heart Rate (beat/min); POD: Right Atrial Pressure (mm Hg); IC: Cardiac Index (L/min/m2); PAPO: Pulmonary Wedge Pressure (mm Hg); RVS: Systemic Vascular Resistance (dyne/s/cm2); SVO2: Mixed Venous Oxygen Saturation (%); PAP: Pulmonary arterial systolic pressure (mm Hg); Mean Pulmonary Arterial Pressure (mm Hg);...

Raw data values of student responses to surveys

Richard Stafford & Rachel Williams
Refer to Supplementary File 4 for details of questions asked and scoring system.

Dataset for mRNA splicing mutations in genetic disease

Natasha Caminsky, Eliseos J. Mucaki & Peter K. Rogan
All data from the extensive review of the literature presented in the article are reported in tables. The following data are provided: articles referring to information theory as a tool for splice site mutation analysis; complete list of reviewed variants; indels, duplications and multinucleotide variants; deletrious natural site variants; branch point variants; type 1-2-3 cryptic splice site variants; validated variants; splicing mutation calculator data.

Demographic characteristics and responses of student respondents

P Ravi Shankar, Arun K Dubey, Atanu Nandy, Burton L Herz & Brian W Little
Dataset 1: Demographic characteristics of student respondents The numbers in the SPSS file have been coded as per the information provided below. Semester of study: Premed semester 1, 2- Premed semester 2, 3- Premed semester 3, 4- Premed semester 4, 5- MD (undergraduate medical program) semester 1, 6- MD (undergraduate medical program) semester 2, 7- MD (undergraduate medical program) semester 3, 8 - MD (undergraduate medical program) semester 4, 9- MD (undergraduate medical program) semester...

Detection of B. pseudomallei in Sputum using Selective Enrichment Broth and Ashdown’s Medium Compared to Standard Culture

Somary Nhem, Joanne Letchford, Chea Meas, Sovanndeth Thann, James C. McLaughlin, Ellen Jo Baron & T. Eoin West
Specimens (Column A) were inoculated into selective enrichment broth before sub-culture onto Ashdown’s medium (Column B). Colonies that grew were tested using the oxidase test (Column C); oxidase-positive colonies were tested using a monoclonal antibody-based latex agglutination test for B. pseudomallei (Column D). The final results of this testing method are given in Column E. All sputum specimens were also cultured onto sheep blood, chocolate, and MacConkey agars. The results of standard culture are given...

Data of fHbp and NadA expression in serogroup W isolates from Ghana and Burkina Faso

Emma Ispasanie, Gerd Pluschke, Abraham Hodgson, Ali Sie, Calman MacLennan & Oliver Koeberling
Quantifications of the amount of fHbp in whole cell extracts from the serogroup W strains are shown in the file ‘Quantifications of fHbp.csv’. The analysis of NadA and fHbp expression in whole cell extracts is shown in the figure provided ‘NadA and fHBP expression.tif'. Details can be found in the text file provided.

Microalgae counts raw data

Karin L. Hastings, Lauren E. Smith, Michael L Lindsey, Luke C. Blotsky, Gloria R. Downing, Derex Q. Zellars, Jason K. Downing & Maria Corena-McLeod
Figure 3 data (sheet 1): Total counts for microalgae (blue, green and diatoms) included in Figure 3 in the manuscript for plots before and after harvest. Figure 3 data (sheet 2): Individual counts for microalgae.

Colorimetry measurements from each donor

Erin Wolf Horrell & John D'Orazio
Skin pigmentation was determined via reflective colorimetry and is represented by an *L score. The *L score was measured three times for each sample. The “A” column represents each donor. The “B,” “C,” and “D” columns represent the first, second, and third measured *L score respectively.

Cycle threshold values for qRTPCR

Erin Wolf Horrell & John D'Orazio
Cycle threshold (CT) values were calculated for BD3 and TBP (housekeeping genes) for each donor. CT values were determined in duplicate for each sample. The “A” column represents the donor. The “B” column represents the sample treatment for the donor. The “C” column represents the target mRNA measured. The “D” column represents the CT value determined for that sample.

Whole slide images from antibody validation of HPA005456 for immunohistochemistry

Will Howat, Jodi Miller & Ioannis Gounaris
Detailed legends for each dataset (Datasets a-f) can be found in the text file provided.

Genotype data for 1627 variants on 5p15.33 (hg19, chr5: 1,243,287-1,355,002) for 1074 individuals from 14 populations

Lisa Mirabello, Charles C. Chung, Meredith Yeager & Sharon A Savage
Data were retrieved for 1627 variants on 5p15.33 (hg19, chr5: 1,243,287-1,355,002) for all individuals in the 14 populations (1092 individuals) included in the 1000 Genomes project (2012 February release). Eighteen potentially related individuals were removed, which resulted in 1074 individuals.

Dataset of Future of Research Symposium

Gary S. McDowell, Kearney T. W. Gunsalus, Drew C. MacKellar, Sarah A. Mazzilli, Vaibhav P. Pai, Patricia R. Goodwin, Erica M. Walsh, Avi Robinson-Mosher, Thomas A. Bowman, James Kraemer, Marcella L. Erb, Eldi Schoenfeld, Leila Shokri, Jonathan D. Jackson, Ayesha Islam, Matthew D. Mattozzi, Kristin A. Krukenberg & Jessica K. Polka
Legends describing each file can be found in the text file provided.

Mass spectrometry data of purified proteins

Eric A. Johnson & Juliette T.J. Lecomte
Mass spectrometry data performed to analyse the components of the Superdex 75 fraction are reported. The procedure was first performed with recombinant rTHB1.

Induction of φΔTOX:GFP strain by ciprofloxacin and chitosan effect

Jaime H. Amorim, Manuel E. Del Cogliano, Romina J. Fernandez-Brando, Marcos F. Bilen, Monica R. Jesus, Wilson B. Luiz, Marina S. Palermo, Rita C.C. Ferreira, Esteban G. Servat, Pablo D. Ghiringhelli, Luis C.S Ferreira & Leticia V. Bentancor
Induction of fDTOX:GFP by ciprofloxacin and effect of chitosan in vitro. A. Growth curve: the E. coli C600DTOX:GFP strain was induced with ciprofloxacin and the optical density was measured at 600 nm at 0, 2, 4 and 6 hours after induction. Non-induced culture of E. coli C600DTOX:GFP strain was used as control. Chitosan was added at 2 or 4 hours after induction. B. Bacteriophage fDTOX:GFP titers: bacteriophage titers were determined at 0, 2, 4 and...

DNA sequencing file for PCR and PD-PCR

Vikash Bhardwaj & Kulbhushan Sharma
DNA sequencing file (DNA sequencing file for PCR.ab1) confirming single stranded template DNA was amplified as it is while DNA sequencing file (DNA sequencing file for PD-PCR.ab1) confirming that single stranded template DNA was amplified as per our proposed PD-PCR scheme within this manuscript.

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