Reconstruction of the diffusion signal with the Tensor model (dipy / reconst_dti)
Runs freesurfer/mri_deface with talairach_mixed_with_skull.gca and face.gca
Compute ANTs transformation between two subjects based on T1 and FA volumes.
SOCR KW wrapper for Brainlife
This app will fit the diffusion tensor model (DTI) to a diffusion MRI image using FSL's dtifit commmand.
Runs FitFullModelSampleAllTracts with 665 parameter set and find the optimal parameters and fit model with the optimal parameters
This service uses MRtrix 0.2.12 to do ensemble tracking using tensor and constrained spherical deconvolution (csd) algorithms. It generates a large set of candidate streamlines using a tensor-based deterministic model, csd-based deterministic model, and csd-based probabilistic model. The csd-based models can be computed at lmax values of 2, 4, 6, 8, 10, and 12. All candidate streamlines are combined into a single track.mat file. If you know the max lmax value for your data input...
fMRI preprocessing via CONN
Generates multiple graphs that can be used as a quality check for the outputs of AFQ and LiFE. This application will only work if the zero weighted fibers are removed AFTER AFQ.
Computes n equally spaced offset surfaces between the white and pial surfaces with equal ratios between areas of successive surfaces, which samples the same layers in gyri and sulci.
Compute ANTs transformation between two subjects based on T1 or FA volumes and apply the transformation to the AFQ segmentation provided.
This will give you the fiber count, mean length, standard deviation of length, total length, and volume of each fiber tract classified by AFQ or WMA.
App for running high resolution structural connectome processing from Pierre Besson
This App takes tract masks and convert them to series of numerical values that chracaterizes each masks. The numerical values are generated from the flattened output of 3D convolutional layers of the model trained to classify tract names. Output values could be used as a "shape signature" and compared against other similar shaped tracts.
This is an old version that used dwi instead of dtiinit