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Additional file 1: Table S1. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

Y. Daguerre, E. Levati, J. Ruytinx, E. Tisserant, E. Morin, A. Kohler, B. Montanini, S. Ottonello, A. Brun, C. Veneault-Fourrey & F. Martin
List of L. bicolor TFs identified in silico displaying similarities with characterized TFs (183 proteins); sharing similarities with predicted or hypothetical proteins with no proved role as transcriptional regulators (94 proteins); sharing similarities with proteins identified as transcriptional regulators without DBD (8 proteins). General information of protein is given (e.g., protein ID from both L. bicolor genome version 1 and version 2, length of the polypeptide, TF name, EST support). Accession number, Description, Species, %...

Additional file 1: Figure S1. of Endoplasmic reticulum stress cooperates with Toll-like receptor ligation in driving activation of rheumatoid arthritis fibroblast-like synoviocytes

Pawel Kabala, Chiara Angiolilli, Nataliya Yeremenko, Aleksander Grabiec, Barbara Giovannone, Desiree Pots, Timothy Radstake, Dominique Baeten & Kris Reedquist
Tunicamycin treatment results in ER stress induction with gene expression pattern similar to that caused by thapsigargin. (TIF 295 kb)

Additional file 1: Figure S1. of Characterization of a secreted cystatin of the parasitic nematode Haemonchus contortus and its immune-modulatory effect on goat monocytes

Yujian Wang, Lingyan Wu, Xinchao Liu, Shuai Wang, Muhammad Ehsan, RuoFeng Yan, XiaoKai Song, LiXin Xu & XiangRui Li
The proteinase inhibition assays of his-tagged protein as control. (DOCX 162 kb)

Effect of silicon supplementation on growth and metabolism of strawberry plants at three developmental stages

Roghieh Hajiboland, Narges Moradtalab, Zarrin Eshaghi & Javad Feizy
The effect of silicon (Si) was studied in strawberry (Fragaria × ananassa) plants grown under greenhouse conditions and harvested at vegetative, flowering and fruiting stages. Vegetative growth and fruit dry weight were improved by Si. The concentration of carbohydrates decreased in the leaves but increased in the roots upon Si treatment. However, the level of the soluble protein pool increased in both leaves and roots at the expense of free amino acids at all three...

Effect of silicon supplementation on growth and metabolism of strawberry plants at three developmental stages

Roghieh Hajiboland, Narges Moradtalab, Zarrin Eshaghi & Javad Feizy
The effect of silicon (Si) was studied in strawberry (Fragaria × ananassa) plants grown under greenhouse conditions and harvested at vegetative, flowering and fruiting stages. Vegetative growth and fruit dry weight were improved by Si. The concentration of carbohydrates decreased in the leaves but increased in the roots upon Si treatment. However, the level of the soluble protein pool increased in both leaves and roots at the expense of free amino acids at all three...

Country-level relationship between GDP growth rates and governance

Tatsuya Amano
Relationship between gross domestic product (GDP) growth rates (https://data.worldbank.org/indicator/NY.GDP.MKTP.KD.ZG) and the effectiveness of governance (measured by the Worldwide Governance Indicators by the World Bank: https://data.worldbank.org/data-catalog/worldwide-governance-indicators) in 2014. Countries in orange are those with less effective governance and rapid economic growth.

Country-level relationship between GDP growth rates and governance

Tatsuya Amano
Relationship between gross domestic product (GDP) growth rates (https://data.worldbank.org/indicator/NY.GDP.MKTP.KD.ZG) and the effectiveness of governance (measured by the Worldwide Governance Indicators by the World Bank: https://data.worldbank.org/data-catalog/worldwide-governance-indicators) in 2014. Countries in orange are those with less effective governance and rapid economic growth.

Data Set for Optics Express submission: Trade-offs between structural integrity and acquisition time in stochastic super-resolution microscopy techniques

Jean-Francois Rupprecht
Dataset associated with the submission: Trade-offs between structural integrity and acquisition time in stochastic super-resolution microscopy techniques, by Jean-Francois Rupprecht, Ariadna Martinez-Marrades, Zhen Zhang, Rishita Changede, Pakorn Kanchanawong, and Gilles Tessier (Dated: April 11, 2017)

1) Data_File_1_STORM_Ax647 & Data_File_2_STORM_tdEos: 2 sequences of localization from labelled tubulin; with Alexa Fluor and with tEoS.

2) Data_File_3_TIRM: sequence of localization events of gold particles.

3) Data_File_4_PALM_silane_1: 2 sequences of localization from a functionalized silane coverslip events.

Data related to microbiology-related papers indexed in PubMed

Patrick Schloss
Processed data used in Schloss et al. (2016) to characterize publishing trends for microbiology-related papers. Methods for generating the data can be found in https://github.com/SchlossLab/Schloss_SocietyJs_mBio_2017.
These data were published by Schloss, Johnston, and Casadevall in their mBio editorial: Support Science by Publishing in Scientific Society Journals

Create Online Researcher’s Profile to Increase Visibility

Nader Ale Ebrahim
Creating and maintaining online profiles will help you to see the impact of your research outputs' on the research community and greater public. Online profiles is an essential tool to disseminate your research and publications. Scholarly identifiers and online profiles like ResearcherID and ORCiD provide a solution to the author ambiguity problem within the scholarly research community. They can also help you to track and measure the impact of your scholarly research publications. Google Scholar...

Create Online Researcher’s Profile to Increase Visibility

Nader Ale Ebrahim
Creating and maintaining online profiles will help you to see the impact of your research outputs' on the research community and greater public. Online profiles is an essential tool to disseminate your research and publications. Scholarly identifiers and online profiles like ResearcherID and ORCiD provide a solution to the author ambiguity problem within the scholarly research community. They can also help you to track and measure the impact of your scholarly research publications. Google Scholar...

Datasets for Loffler & Hoey Journal of Ecology

Zoe Loffler & Andrew Scott Hoey
Data describing changes in Sargassum density and height after manipulations mimicking storm damage.

Also includes data on changes in number of holdfasts on rocks caged and exposed to herbivory over 16 weeks.

Datasets for Loffler & Hoey Journal of Ecology

Zoe Loffler & Andrew Scott Hoey
Data describing changes in Sargassum density and height after manipulations mimicking storm damage.

Also includes data on changes in number of holdfasts on rocks caged and exposed to herbivory over 16 weeks.

functional test case with one resistor

Thomas Thurman
Simple functional product data model encoded in ISO 10303-21 concrete syntax.

ISO 10303-210:2000 AIM EXPRESS file

Thomas Thurman
EXPRESS schema for ISO 10303-210:2000.This schema is obsolete and is provided for archival purposes only.

functional test case with one resistor

Thomas Thurman
Simple functional product data model encoded in ISO 10303-21 concrete syntax.

Online Labour Index: Measuring the Online Gig Economy for Policy and Research

Otto Kässi, Martin Hadley & Vili Lehdonvirta
Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.

Multiset Model Selection

Andrew Hoegh, Dipayan Maiti & Scotland Leman
Model selection algorithms are required to efficiently traverse the space of models. In problems with high-dimensional and possibly correlated covariates, efficient exploration of the model space becomes a challenge. In order to overcome this, a multiset is placed on the model space to enable efficient exploration of multiple model modes with minimal tuning. The Multiset Model Selection (MSMS) framework is based on independent priors for the parameters and model indicators on variables. Posterior model probabilities...

Multiset Model Selection

Andrew Hoegh, Dipayan Maiti & Scotland Leman
Model selection algorithms are required to efficiently traverse the space of models. In problems with high-dimensional and possibly correlated covariates, efficient exploration of the model space becomes a challenge. In order to overcome this, a multiset is placed on the model space to enable efficient exploration of multiple model modes with minimal tuning. The Multiset Model Selection (MSMS) framework is based on independent priors for the parameters and model indicators on variables. Posterior model probabilities...

Mutual information on metric space - poster pdf

Conor Houghton
Poster for NCCD2017 based on the paper R. Soc. open sci. 2015 2 140391; DOI: 10.1098/rsos.140391. This paper gives a simple formula for estimating mutual information between random variables on metric spaces.

Arabidopsis thaliana Acyl-CoA-binding protein ACBP6 interacts with plasmodesmata-located protein PDLP8

Zi-Wei Ye, Qin-Fang Chen & Mee-Len Chye
In Arabidopsis thaliana, six acyl-CoA-binding proteins (ACBPs), designated as AtACBP1 to AtACBP6, have been identified to function in various events related to plant stress and development. The 10-kDa AtACBP6 is the smallest in this protein family, and recombinant AtACBP6 interacts with lipids in vitro by binding to acyl-CoA esters and phosphatidylcholine. Using anti-AtACBP6 antibodies in immunoelectron microscopy, we have localized AtACBP6 in the Arabidopsis phloem. The detection of immunogold grains in the plasmodesmata suggested that...

Welfare Changes from Agricultural Yield Shocks for 1-3 Degrees of Global Warming (AgMIP, Preferred Ensemble)

Frances Moore, Uris Baldos, Thomas Hertel & Delavane Diaz
Shape file with 140 GTAP regions giving welfare changes for 1-3 degrees of warming. Three values are given for each level of warming - the central estimate (50th percentile) and the upper (97.5th percentile) and lower (2.5th percentile) bounds of the 95% confidence interval. The column "VOM" gives the total value of the shocked sectors for that region, used to normalize the welfare changes to give % change, as reported in Moore et al (in...

Welfare Changes from Agricultural Yield Shocks for 1-3 Degrees of Global Warming (AgMIP, Preferred Ensemble)

Frances Moore, Uris Baldos, Thomas Hertel & Delavane Diaz
Shape file with 140 GTAP regions giving welfare changes for 1-3 degrees of warming. Three values are given for each level of warming - the central estimate (50th percentile) and the upper (97.5th percentile) and lower (2.5th percentile) bounds of the 95% confidence interval. The column "VOM" gives the total value of the shocked sectors for that region, used to normalize the welfare changes to give % change, as reported in Moore et al (in...

Welfare Changes from Agricultural Yield Shocks for 1-3 Degrees of Global Warming (Meta-Analysis)

Frances Moore, Uris Baldos, Thomas Hertel & Delavane Diaz
Shape file with 140 GTAP regions giving welfare changes for 1-3 degrees of warming. Three values are given for each level of warming - the central estimate (50th percentile) and the upper (97.5th percentile) and lower (2.5th percentile) bounds of the 95% confidence interval. The column "VOM" gives the total value of the shocked sectors for that region, used to normalize the welfare changes to give % change, as reported in Moore et al (in...

Welfare Changes from Agricultural Yield Shocks for 1-3 Degrees of Global Warming (Meta-Analysis)

Frances Moore, Uris Baldos, Thomas Hertel & Delavane Diaz
Shape file with 140 GTAP regions giving welfare changes for 1-3 degrees of warming. Three values are given for each level of warming - the central estimate (50th percentile) and the upper (97.5th percentile) and lower (2.5th percentile) bounds of the 95% confidence interval. The column "VOM" gives the total value of the shocked sectors for that region, used to normalize the welfare changes to give % change, as reported in Moore et al (in...

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