1,888 Works

Computational systems biology: translational tools for data integration and modeling

Thomas Knudsen
Presentation at the International Congress of Toxicology (ICT) triennial conference in July 2019

Computational systems biology: translational tools for data integration and modeling

Thomas Knudsen
Presentation at the International Congress of Toxicology (ICT) triennial conference in July 2019

Neurotoxicant literature

EPA's National Center For Computational Toxicology
This Excel macro-enabled workbook contains a list of chemicals affecting the nervous system. The construction of the file is described in the manuscript “Connecting Environmental Exposure and Neurodegeneration using Cheminformatics and High Resolution Mass Spectrometry: Potential and Challenges” available at http://doi.org/10.1039/C9EM00068B. The chemicals are MeSH terms and the links to the nervous system are determined by co-occurrences of MeSH terms in PubMed. DSSToxIDs and CAS are added where available.

Neurotoxicant literature

EPA's National Center For Computational Toxicology
This Excel macro-enabled workbook contains a list of chemicals affecting the nervous system. The construction of the file is described in the manuscript “Connecting Environmental Exposure and Neurodegeneration using Cheminformatics and High Resolution Mass Spectrometry: Potential and Challenges” available at http://doi.org/10.1039/C9EM00068B. The chemicals are MeSH terms and the links to the nervous system are determined by co-occurrences of MeSH terms in PubMed. DSSToxIDs and CAS are added where available.

CompTox Chemicals Dashboard Metadata Files for Integration with MetFrag

EPA's National Center For Computational Toxicology
The integration of metadata files from the CompTox Chemicals Dashboard with the online version of the MetFrag in silico fragmenter has previously been discussed in the paper ““MS-Ready” structures for non-targeted high-resolution mass spectrometry screening studies” by McEachran et al. (link to https://doi.org/10.1186/s13321-018-0299-2). For local installations of MetFrag we have provided here downloadable versions of these metadata files.

CompTox Chemicals Dashboard Metadata Files for Integration with MetFrag

EPA's National Center For Computational Toxicology
The integration of metadata files from the CompTox Chemicals Dashboard with the online version of the MetFrag in silico fragmenter has previously been discussed in the paper ““MS-Ready” structures for non-targeted high-resolution mass spectrometry screening studies” by McEachran et al. (link to https://doi.org/10.1186/s13321-018-0299-2). For local installations of MetFrag we have provided here downloadable versions of these metadata files.

CompTox Chemicals Dashboard Metadata Files for Integration with MetFrag

EPA's National Center For Computational Toxicology
The integration of metadata files from the CompTox Chemicals Dashboard with the online version of the MetFrag in silico fragmenter has previously been discussed in the paper ““MS-Ready” structures for non-targeted high-resolution mass spectrometry screening studies” by McEachran et al. (link to https://dx.doi.org/ 10.1186/s13321-018-0299-2). For local installations of MetFrag we have provided here downloadable versions of these metadata files.

Navigating towards data-driven read-across approaches: Generalised Read Across (GenRA), a workflow module within the EPA CompTox Chemicals Dashboard

Grace Patlewicz
Invited presentation at the International Council of Chemical Associations’ Long-Range Research Initiative (ICCA-LRI) workshop entitled '21st Century Approaches for Evaluating Biological Activity, Exposures, and Risks of Complex Substances' held June 2019 in Stresa, Italy

Navigating towards data-driven read-across approaches: Generalised Read Across (GenRA), a workflow module within the EPA CompTox Chemicals Dashboard

Grace Patlewicz
Invited presentation at the International Council of Chemical Associations’ Long-Range Research Initiative (ICCA-LRI) workshop entitled '21st Century Approaches for Evaluating Biological Activity, Exposures, and Risks of Complex Substances' held June 2019 in Stresa, Italy

Data Management, Publication/Authorship, and Peer Review

Thomas Knudsen
Invited presentation given at the Professional Development Workshop: 'Irresponsible Conduct of Research: What Happens When Things Go Wrong' at the Teratology Society's 59th Annual Meeting June 2019

Data Management, Publication/Authorship, and Peer Review

Thomas Knudsen
Invited presentation given at the Professional Development Workshop: 'Irresponsible Conduct of Research: What Happens When Things Go Wrong' at the Teratology Society's 59th Annual Meeting June 2019

Discussion Session: Performance Criteria/Parameters for Developing Reference Materials for Transcriptomics and Metabolomics Technologies

Joshua Harrill
Presentation for the discussion session on reference materials to be given at the Organization for Economic Co-operation and Development (OECD) Extended Advisory Group for Molecular Screening and Toxicogenomics (EAGMST) summer meeting June 2019 in Paris France

Discussion Session: Performance Criteria/Parameters for Developing Reference Materials for Transcriptomics and Metabolomics Technologies

Joshua Harrill
Presentation for the discussion session on reference materials to be given at the Organization for Economic Co-operation and Development (OECD) Extended Advisory Group for Molecular Screening and Toxicogenomics (EAGMST) summer meeting June 2019 in Paris France

Update on Development of Guidance Document(s) for Consistent Reporting of ‘Omics Data From Various Sources (OECD EAGMST)

Joshua Harrill
Presentation on the Transcriptomics Reporting Framework (TRF) project to be given at the Organization for Economic Co-operation and Development (OECD) Extended Advisory Group for Molecular Screening and Toxicogenomics (EAGMST) summer meeting June 2019 in Paris France

Update on Development of Guidance Document(s) for Consistent Reporting of ‘Omics Data From Various Sources (OECD EAGMST)

Joshua Harrill
Presentation on the Transcriptomics Reporting Framework (TRF) project to be given at the Organization for Economic Co-operation and Development (OECD) Extended Advisory Group for Molecular Screening and Toxicogenomics (EAGMST) summer meeting June 2019 in Paris France

Developing Reference Chemical Lists for Validation of In Vitro Assays

Richard Judson
Presentation to the Organization for Economic Co-operation and Development (OECD) Extended Advisory Group for Molecular Screening and Toxicogenomics (EAGMST) summer meeting June 2019 in Paris France

Developing Reference Chemical Lists for Validation of In Vitro Assays

Richard Judson
Presentation to the Organization for Economic Co-operation and Development (OECD) Extended Advisory Group for Molecular Screening and Toxicogenomics (EAGMST) summer meeting June 2019 in Paris France

Update on Development of Guidance Document(s) for Consistent Reporting of ‘Omics Data From Various Sources

Joshua Harrill
Update presentation on the Transcriptomics Reporting Framework (TRF) project to be given at the Organization for Economic Co-operation and Development (OECD) Extended Advisory Group for Molecular Screening and Toxicogenomics (EAGMST) Working Party on Hazard Assessment (WPHA) summer meeting June 2019 in Paris France

Update on Development of Guidance Document(s) for Consistent Reporting of ‘Omics Data From Various Sources

Joshua Harrill
Update presentation on the Transcriptomics Reporting Framework (TRF) project to be given at the Organization for Economic Co-operation and Development (OECD) Extended Advisory Group for Molecular Screening and Toxicogenomics (EAGMST) Working Party on Hazard Assessment (WPHA) summer meeting June 2019 in Paris France

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