43 Works

Moving code to data using workflow standards and containers

Eugene De Beste
Presentation given by Eugene de Beste at Galaxy Africa 2018 (Cape Town, South Africa)

Community building - Lessons from The Carpentries

Caroline Ajilogba
Presentation given by Caroline Ajilogba at Galaxy Africa 2018 (Cape Town, South Africa)

Getting the Most out of HTC with Workflows

Peter Van Heusden & Christina Koch
Slides for a presentation on High Throughput Computing and workflows including

1. Commentary on the contract between High Throughput Computing (HTC) and High Performance Computing (HPC)2. A description of the layers of the Research Computing stack3. Theory of workflow design and considerations in workflow design

Data Intensive Research In South Africa

Anwar Vahed
Presentation given by Dr Anwar Vahed at Galaxy Africa 2018 (Cape Town, South Africa)

Welcome to the Galaxy

Björn Grüning
Presentation given by Björn Grüning at Galaxy Africa 2018 (Cape Town, South Africa)

Horizontal scaling with Galaxy

Enis Afgan
Presentation given by Enis Afghan at Galaxy Africa 2018 (Cape Town, South Africa)

Galaxy Africa 2018 Presentations

Peter Van Heusden, Hocine Bendou, Zipho Mashologu, Charles Hefer, Caroline Ajilogba, Chris Barnett, Enis Afghan, Thoba Lose, Anwar Vahed, Bérénice Batut, Björn Grüning, Scott Hazelhurst & Eugene De Beste
Slides from presentations given during Galaxy Africa 2018 (Cape Town, South Africa)

Getting the Most out of HTC with Workflows

Peter Van Heusden & Christina Koch
Slides for a presentation on High Throughput Computing and workflows including

1. Commentary on the contract between High Throughput Computing (HTC) and High Performance Computing (HPC)2. A description of the layers of the Research Computing stack3. Theory of workflow design and considerations in workflow design

COMBAT-TB: An integrated environment for M. tuberculosis d ata analysis

Peter Van Heusden
Presentation on the COMBAT TB: tools and databases for bioinformatics of M. tuberculosis

Horizontal scaling with Galaxy

Enis Afgan
Presentation given by Enis Afghan at Galaxy Africa 2018 (Cape Town, South Africa)

Solving glycobioinformatics with Galaxy

Chris Barnett
Presentation given by Chris Barnett at Galaxy Africa 2018 (Cape Town, South Africa)

From biobanking to bioinformatics

Hocine Bendou
Presentation given by Hocine Bendou at Galaxy Africa 2018 (Cape Town, South Africa)

"A Game Changer for Research? GDPR and Health Data" and "Data sharing & biobanks"

Nora Ni Loideain & Ciara Staunton
Presentations by Nora Ni Loideain and Ciara Staunton given on 21 May 2018 at SANBI, University of the Western Cape. The conversation was live-tweeted by Peter van Heusden and a link to that Twitter thread is in the references of this item.

Rate the Library - Student feedback 2018

Allison Fullard
During SA Library Week 2018, Library staff visited different buildings on campus and asked students to rate the library Thumbs Up or Thumbs Down and handed students poll papers to motivate their vote and give the library feedback. The responses were captured and coded thematically into Thumbs Up and Thumbs Down. The comments are used to improve the library facilities and services.

High Throughput Computing in bioinformatics: workflows, containers and emerging paradigms

Peter Van Heusden
Next Generation Sequencing has brought genomic analysis within the range of a great number of laboratories, while increasing the demand for bioinformatic analysis. These typically comprise workflows composed out of chains of analyses with data flowing between workflow steps. Such analysis is amenable to High Throughput Computing, a form of high performance computing characterised by a focus on overall analysis throughput rather than optimisation of a single application. In recent years workflow languages and container...

Moving code to data using workflow standards and containers

Eugene De Beste
Presentation given by Eugene de Beste at Galaxy Africa 2018 (Cape Town, South Africa)

From biobanking to bioinformatics

Hocine Bendou
Presentation given by Hocine Bendou at Galaxy Africa 2018 (Cape Town, South Africa)

Using Galaxy for M. tuberculosis variant calling

Zipho Mashologu
Presentation given by Ziphozakhe Mashologu at Galaxy Africa 2018 (Cape Town, South Africa)

Registration Year

  • 2017
    3
  • 2018
    40

Resource Types

  • Audiovisual
    21
  • Text
    8
  • Collection
    5
  • Dataset
    5
  • Other
    4