326 Works

Raw data files that were used in writing "Analysis of human plasma metabolites across different liquid chromatography/mass spectrometry platforms: Cross-platform transferable chemical signatures"

Kelly H. Telu, Xinjian Yan, William E. Wallace, Stephen E. Stein & Yamil Simón-Manso
LC-MS raw data sets from various instruments delivered in their native instrument format. 31 files in all. 7.5 GB data.

Steps to achieve quantitative measurements of microRNA using two-step droplet digital PCR

Erica Sawyer
Droplet digital PCR (ddPCR) is being advocated as a reference method to measure rare genomic targets. It has consistently been proven to be more sensitive and direct at discerning copy numbers of DNA than other quantitative methods. However, one of the largest obstacles to measuring microRNA (miRNA) using ddPCR is that reverse transcription efficiency depends upon the target, meaning small RNA nucleotide composition directly effects primer specificity in a manner that prevents traditional quantitation optimization...

NISTfit

Ian Bell
NISTFIT is a heavily abstracted C++-based kernel for fitting correlations. The software is written in our source languages. The current trend in computer architecture is for increasingly parallel computation while the clock frequency stagnates. The increase in computing speed is achieved by dividing a process into several threads which are executed in parallel on multiple processors, processors with multiple cores, cores that are able to handle multiple threads (hyper-threading), graphical processing units (GPU), or co-processors....

DICOM files for "RECIST and Volumetric CT Measurements of Injected-Water Phantoms" by ZH Levine, HH Chen-Mayer, AP Peskin, and AL Pintar.

Zachary Levine, Adele Peskin, Adam Pintar & Huaiyu Chen-Mayer
DICOM files are given for 11 CT scans which were used in a research article. Each scan contains about 1250 slices with 512x512 gray scale images, each in its own directory. The low number slices contain the diapers in the order D5 ... D1, then the vials of powder are contained in the order V11 ... V2. The symbols correspond to the injected masses which are given in the paper and which are repeated here...

NIST Reference Fluid Thermodynamic and Transport Properties Database (REFPROP) Version 10 - SRD 23

Marcia Huber, Allan Harvey, Eric Lemmon, Gary Hardin, Ian Bell & Mark McLinden
REFPROP is an acronym for REFerence fluid PROPerties. This program, developed by the National Institute of Standards and Technology (NIST), calculates the thermodynamic and transport properties of industrially important fluids and their mixtures. These properties can be displayed in Tables and Plots through the graphical user interface; they are also accessible through spreadsheets or user-written applications accessing the REFPROP dll. REFPROP is based on the most accurate pure fluid and mixture models currently available. It...

NIST Special Database 301 Nail to Nail (N2N) Fingerprint Challenge Dry Run

Patricia Flanagan, Elham Tabassi, Gregory Fiumara, John Grantham, John Libert, Karen Marshall & Kenneth Ko
In April 2017, the Intelligence Advanced Research Projects Activity (IARPA) held a dry run for the data collection portion of its Nail to Nail (N2N) Fingerprint Challenge. This data collection event was designed to ensure that the real data collection event held in September 2017 would be successful. To this end, biometric data from unhabituated individuals needed to be collected. That data is now released by NIST as Special Database 301.\n\nIn total, 14 fingerprint sensors...

NIST/ARPA-E Database of Novel and Emerging Adsorbent Materials

Dan Siderius, Vincent Shen & Russell Johnson
The NIST/ARPA-E Database of Novel and Emerging Adsorbent Materials is a free, web-based catalog of adsorbent materials and measured adsorption properties of numerous materials obtained from article entries from the scientific literature. Search fields for the database include adsorbent material, adsorbate gas, experimental conditions (pressure, temperature), and bibliographic information (author, title, journal), and results from queries are provided as a list of articles matching the search parameters. The database also contains adsorption isotherms digitized from...

Light field camera resolution evaluations

Peter Bajcsy, James Filliben, John Lu, Maritoni Litorja, Soweon Yoon & William Guthrie
Evaluation of Lateral and Depth Resolutions of Light Field Cameras: Light field cameras have the potential of becoming inexpensive and portable 3D imaging instruments. However, the suitability of this camera to a specific application depends on resolution requirements. This data set was collected to assess the image resolution of light field cameras during acquisition configurations similar to the ones encountered by forensic photographers at crime scenes. Examples of 3D crime scene objects include tire tread...

Sequence-based U.S. population data for 27 autosomal STR loci

Katherine Gettings, Peter Vallone, Kevin Kiesler, Carolyn Steffen & Lisa Borsuk
This information and data are supplemental files associated with: Gettings, K.B., Borsuk, L.A., Steffen, C.R., Kiesler, K.M., and P.M.Vallone. Sequence-based U.S. population data for 27 autosomal STR loci, Forensic Science International Genetics (submitted for publication). The primary data consists of sequence-based allele frequencies for N=1036 anonymized U.S. population samples at 27 autosomal Short Tandem Repeat (auSTR) loci: D1S1656, TPOX, D2S441, D2S1338, D3S1358, D4S2408, FGA, D5S818, CSF1PO, D6S1043, D7S820, D8S1179, D9S1122, D10S1248, TH01, vWA, D12S391, D13S317,...

Data and Results from Three Peg-in-Hole Experiments for Improving Insertion Tasks

Geraldine Cheok, Marek Franaszek & Karl Van Wyk
A method was developed to reduce the point-based registration error by restoring the rigid body condition (RRBC method). Registration is the process of transforming one coordinate frame to another coordinate frame. The coordinate frame from which points are transformed is called the working frame and the coordinate frame to which points are transformed is called the destination frame. The RRBC method can be used to reduce the uncertainty of a hole location and thus, improve...

Quantum dot data for machine learning

Justyna Zwolak, Xingyao Wu, Shephen Ragole, Sandesh Kalantre & Jacob Taylor
Using a modified Thomas-Fermi approximation, we model a reference semiconductor system comprising a quasi-1D nanowire with a series of five depletion gates whose voltages determine the number of dots and the charges on each of those dots, as well as the conductance through the wire. The data set consists of 1001 generated gate configurations averaging over different realizations of the same type of device. Each sample data is then stored as a 100x100 pixel map...

moose_psu_1a_IA

PC. Simon
Metadata for the Benchmark1 problems

1000+ z-stack experiment

Peter Bajcsy & Carl Simon
This data set consists of 1000+ z-stack of actin and nucleus stained cells. The cells reside on 10 different scaffold types and are segmented from the z-stacks to investigate their shape changes.

FEASST: Free Energy and Advanced Sampling Simulation Toolkit

Harold Hatch
The Free Energy and Advanced Sampling Simulation Toolkit (FEASST) is a free, open-source, modular program to conduct molecular and particle-based simulations with flat-histogram Monte Carlo and molecular dynamics methods. It is a software written in C++ and python which is made publicly available to aid in reproducibility. It is also provided as a service to the scientific community in which there are few , if any, Monte Carlo programs that support flat histogram methods and...

Source files for online unpolarized neutron and x-ray reflectivity calculator

Brian Maranville
The data stored here is a program to be run in a web browser, and as such the end-user must have access to the javascript code.

fipy_6b_macbookpro

Jon Guyer
Serial benchmark with FiPy on Gmsh mesh with round right

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