460 Works

Meristem zone length

Admin Admin
The size of the meristem was measured from the quiescent center to the onset of the rapid longitudinal cell expansion in the cortex tissue (meristem zone length)

MRVA75

Julkowska Magdalena
EZ-Rhizo - Main Root Vector Angle at 75 mM NaCl

Mean(TLRL) CK

Ristova Daniela
After 3 days of treatment, plates were scanned with CCD flatbed scanners (EPSON Perfection V600 Photo, Seiko Epson, Nagano, Japan), and images used to quantify root parameters with FIJI, by using the tool ‘segmented line’ (Schindelin et al., 2012) as described in Ristova and Busch (2017). In particular, we quantified: primary root length on day 10 (P), growth rate of P after treatment (P2), branching zone or the length of P between the first and...

Co59_raw_imputed_amm

AraGWAS Catalog
GWAS study using the method "amm" with the "Full imputed genotype" genotype and "raw"" transformation

Mean(TRL) C

Ristova Daniela
After 3 days of treatment, plates were scanned with CCD flatbed scanners (EPSON Perfection V600 Photo, Seiko Epson, Nagano, Japan), and images used to quantify root parameters with FIJI, by using the tool ‘segmented line’ (Schindelin et al., 2012) as described in Ristova and Busch (2017). In particular, we quantified: primary root length on day 10 (P), growth rate of P after treatment (P2), branching zone or the length of P between the first and...

Cu65

Salt David
Copper concentrations in leaves

LN22

Admin Admin
Plants were checked bi-weekly for presence of first buds, and the average leaf number at flowering time of 4 plants of the same accession were collected

avrRpm1

Admin Admin
Following inoculation of two leaves per plant with 0.1 ml of 10 -8 cfu/ml bacteria in 10 mM MgSO4 buffer using a blunt-tipped syringe, leaf collapse was scored at 20 hrs and again at 24 hrs after inoculation. A positive score at either time point was deemed a hypersensitive response

Bacterial titer

Admin Admin
Following inoculation into leaf tissues, the titers of bacteria were measured at 0 and 4 days. Bacterial titres were measured from hole-punched leaf disks ground in 200μL of 10 mM MgSO4. Measurements were expressed as colony forming units per unit area and replicated in triplicate.

avrB_raw_imputed_amm

AraGWAS Catalog
GWAS study using the method "amm" with the "Full imputed genotype" genotype and "raw"" transformation

MRVL75

Julkowska Magdalena
EZ-Rhizo - Main Root Vector Length (straight line from beginning to end of the main root) at 75 mM NaCl

Width 10

Admin Admin
The diameters of 4 plants of each accession were measured and the results were expressed as an average value across all available replicates.Plants were scored 8 weeks post germination

2W_raw_imputed_amm

AraGWAS Catalog
GWAS study using the method "amm" with the "Full imputed genotype" genotype and "raw"" transformation

Hypocotyl length_raw_imputed_amm

AraGWAS Catalog
GWAS study using the method "amm" with the "Full imputed genotype" genotype and "raw"" transformation

Mean(P2) ABA

Ristova Daniela
After 3 days of treatment, plates were scanned with CCD flatbed scanners (EPSON Perfection V600 Photo, Seiko Epson, Nagano, Japan), and images used to quantify root parameters with FIJI, by using the tool ‘segmented line’ (Schindelin et al., 2012) as described in Ristova and Busch (2017). In particular, we quantified: primary root length on day 10 (P), growth rate of P after treatment (P2), branching zone or the length of P between the first and...

Storage 28 days

Admin Admin
Primary dormancy was measured as the progressive increase of germination rate measured after 28 days of dry storage

LDV

Admin Admin
Number of days to flowering under long days after 4 weeks vernalization. Seeds were stratified, and days we counted from the end of stratification. The experiment was stopped at 200 d, and accessions that had not flowered at that point were assigned a value of 200

S34_raw_imputed_amm

AraGWAS Catalog
GWAS study using the method "amm" with the "Full imputed genotype" genotype and "raw"" transformation

8W GH LN_raw_imputed_amm

AraGWAS Catalog
GWAS study using the method "amm" with the "Full imputed genotype" genotype and "raw"" transformation

YieldMainEffect2009_raw_imputed_amm

AraGWAS Catalog
GWAS study using the method "amm" with the "Full imputed genotype" genotype and "raw"" transformation

YieldPlantingSummer2009

Admin Admin
Yield was recorded as dry seed weight in grams in Experiment 2 with two replicates under each condition

0W GH FT_raw_imputed_amm

AraGWAS Catalog
GWAS study using the method "amm" with the "Full imputed genotype" genotype and "raw"" transformation

Root length (Day 1)

Satbhai Santosh
Root length was measured 1 day post germination

Registration Year

  • 2016
    153
  • 2017
    193
  • 2018
    9
  • 2019
    105

Resource Types

  • Dataset
    443
  • Collection
    17