59 Works

EEG eeglab to mne/raw

Julia Guiomar Niso Galan
Converts EEG eeglab data to MNE Raw (fif)

Generate tract figures (wma_pyTools)

Daniel Bullock
Generate the following kinds of figures: > General streamline anatomy plot (color-coded in accordance with morphological characteristics) > Density GIFs > Multi-tile density plots > "Fingerprint" plots (radial bar-plots indicating streamline termination locations)

Convert tcks to tck and WMC

Daniel Bullock
Simple converter for the multi-tck format, tcks, which combines these into a single tck file and produces an associated WMC file.

Average ERP (MNE)

Julia Guiomar Niso Galan
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fMRIPrep - Volume Output - Test

Brad Caron, Daniel Levitas, David Hunt, Giulia Berto, Josh Faskowitz & Soichi Hayashi
fMRIPrep is a functional magnetic resonance imaging (fMRI) data preprocessing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to variations in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

Structural Connectome MRTrix3 (SCMRT)

Brad Caron
Generate structural connectomes using MRTrix3

Filter WMC Datatype

Brad Caron
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Freesurfer 7.1.1 - Multiple T1w Inputs

Brad Caron
Freesurfer segments the t1w anatomical data into functionally different parts of the brain. Segmentation/parcellation can then be fed to many other subsequent analysis. This is a copy of https://doi.org/10.25663/brainlife.app.462, but updated to allow for multiple T1w inputs

Clustering edge time series

Farnaz Zamani Esfahlani
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Compute summary statistics of diffusion measures mapped to visual regions binned by eccentricity - Benson14

Brad Caron
This app will compute the average diffusion metrics, and anatomical measures from Freesurfer including thickness, surface area, and volume, within the visual areas returned by the prf - Benson14 app. Will return a parc-stats datatype for each eccentricity-binned visual area parcellation.

app- covariance

Saeed ZAHRAN & Soichi Hayashi
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MEG FIF to mne/raw

Julia Guiomar Niso Galan
Converts MEG FIF data to MNE Raw (fif)

Segment with ROIs

Daniel Bullock
Segment a tractogram to return a tract or tracts

Referral of sensation

Annegret Hagenberg
Dataset for experiment study

Convert quality control (qc) data from eddy to regressors datatype

Brad Caron
This app will convert the quality control (qc) data from eddy to a regressors datatype to be used as a nuisance matrix for statistical analyses

Create networkneuro datatype for visualization

Brad Caron
This app is purely designed to generate a datatype that will work with the tractvis networkneuro visualizer.

Sample streamlines based on labels assignments

Brad Caron
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Compute Peaks from Spherical Harmonic (SH) data

Brad Caron
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Compute streamline weights using COMMIT

Brad Caron
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Tissue-specific SNR (and other tissue-specific metrics)

Daniel Bullock
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Track Visual White Matter Tracks by Visual Field Eccentricty: Contrack

Brad Caron
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YouTube Dataset

Sandra Hanekamp
add description

Emptyroom projs

Julia Guiomar Niso Galan
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app-forward

Saeed ZAHRAN
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app-inverse

Saeed ZAHRAN
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Registration Year

  • 2022
    59

Resource Types

  • Software
    59