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mabarbour/complexity_selection: Revision for The American Naturalist

Matt Barbour
This version of the manuscript incorporates comments from an Editor (Dr. Alice Winn), Associate Editor (Dr. Jennifer Lau), and two anonymous reviewers from the review process at The American Naturalist.

mabarbour/complexity_selection: Revision for The American Naturalist

Matt Barbour
This version of the manuscript incorporates comments from an Editor (Dr. Alice Winn), Associate Editor (Dr. Jennifer Lau), and two anonymous reviewers from the review process at The American Naturalist.

kbroman/xoi: Version 0.68-3

Karl Broman
Small bug fix re || vs | in functions for gamma probabilities.

kbroman/xoi: Version 0.68-3

Karl Broman
Small bug fix re || vs | in functions for gamma probabilities.

janmedlock/plant_vector_viruses: Code for submitted manuscript

Jan Medlock
Species interactions affect the spread of vector-borne plant pathogens independent of transmission mode

janmedlock/plant_vector_viruses: Code for submitted manuscript

Jan Medlock
Species interactions affect the spread of vector-borne plant pathogens independent of transmission mode

chasemc/IDBacApp: 1.0.64

Chase Clark
A MALDI Mass Spectrometry Bioinformatics Platform

chasemc/IDBacApp: 1.0.64

Chase Clark
A MALDI Mass Spectrometry Bioinformatics Platform

JuliaReach/LazySets.jl: v1.12.0

Christian Schilling, Marcelo Forets, Kostakoida, Tomerarnon, Bruno Garate, Nikos-Kekatos, Sebastián Guadalupe, Viryfrederic, Morten Piibeleht & Aadesha
A Julia package for calculus with convex sets

JuliaReach/LazySets.jl: v1.12.0

Christian Schilling, Marcelo Forets, Kostakoida, Tomerarnon, Bruno Garate, Nikos-Kekatos, Sebastián Guadalupe, Viryfrederic, Morten Piibeleht & Aadesha
A Julia package for calculus with convex sets

IARCbioinfo/needlestack: v1.1

Matthieu Foll, Tiffany Delhomme, AurelieGabriel, Nalcala, V-Catherine & The Gitter Badger
Full Changelog Implemented enhancements: add needlestack logo in log.info #182 add INFO field containing allelic frequency #174 Add an option to only plot somatic mutations #149 Make the main 3 processes pipe-friendly to avoid intermediate outputs #147 Re-write pileup2baseindel.pl in C++ #146 Flag possible cross-sample contamination of normal DNA in tumor samples #138 Put ./. genotype when there is no power to identify a variant #137 Implement Tumor-Normal pair somatic variant calling #133 Add alignment...

IARCbioinfo/needlestack: v1.1

Matthieu Foll, Tiffany Delhomme, AurelieGabriel, Nalcala, V-Catherine & The Gitter Badger
Full Changelog Implemented enhancements: add needlestack logo in log.info #182 add INFO field containing allelic frequency #174 Add an option to only plot somatic mutations #149 Make the main 3 processes pipe-friendly to avoid intermediate outputs #147 Re-write pileup2baseindel.pl in C++ #146 Flag possible cross-sample contamination of normal DNA in tumor samples #138 Put ./. genotype when there is no power to identify a variant #137 Implement Tumor-Normal pair somatic variant calling #133 Add alignment...

Integrative-Transcriptomics/DamageProfiler: DamageProfiler v0.4.7

Alexander Peltzer & Judith Neukamm
nicer output folder naming updating readme changing min and max values in histograms possible Still in development, feedback is always appreciated.

Integrative-Transcriptomics/DamageProfiler: DamageProfiler v0.4.7

Alexander Peltzer & Judith Neukamm
nicer output folder naming updating readme changing min and max values in histograms possible Still in development, feedback is always appreciated.

BICF ChIP-seq Analysis Workflow

Spencer D. Barnes, Holly Ruess, Beibei Chen & Venkat S. Malladi
BICF ChIPseq is a bioinformatics best-practice analysis pipeline used for ChIP-seq (chromatin immunoprecipitation sequencing) data analysis at BICF at UT Southwestern Dept. of Bioinformatics. The pipeline uses Nextflow a bioinformatics workflow tool. It pre-processes raw data from FastQ inputs, aligns the reads and performs extensive quality-control on the results. This pipeline is primarily used with a SLURM cluster on the BioHPC Cluster. However, the pipeline should be able to run on any system that Nextflow...

BICF ChIP-seq Analysis Workflow

Spencer D. Barnes, Holly Ruess, Beibei Chen & Venkat S. Malladi
BICF ChIPseq is a bioinformatics best-practice analysis pipeline used for ChIP-seq (chromatin immunoprecipitation sequencing) data analysis at BICF at UT Southwestern Dept. of Bioinformatics. The pipeline uses Nextflow a bioinformatics workflow tool. It pre-processes raw data from FastQ inputs, aligns the reads and performs extensive quality-control on the results. This pipeline is primarily used with a SLURM cluster on the BioHPC Cluster. However, the pipeline should be able to run on any system that Nextflow...

IDLabResearch/function-ontology: v0.5.1

Ben De Meester
The Function Ontology, and a set of function descriptions (http://w3id.org/function/ontology)

IDLabResearch/function-ontology: v0.5.1

Ben De Meester
The Function Ontology, and a set of function descriptions (http://w3id.org/function/ontology)

IDLabResearch/function-ontology: v0.5.0

Ben De Meester
The Function Ontology, and a set of function descriptions (http://w3id.org/function/ontology)

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