805 Works

Horizon Europe - How to submit a Marie Skłodowska-Curie Actions Proposal having ISPC-CNR as Host Organisation - PART A

Licia Cutroni
The goal of MSCA Postdoctoral Fellowships is to enhance the creative and innovative potential of excellent researchers of any nationality holding a PhD. Experienced researchers must have a maximum 8 years from date of award of the (first) doctoral degree. The MSCA strongly contribute to excellent research, boosting jobs, growth and investment by equipping researchers with new knowledge and skills and providing them with an international as well as inter-sectoral exposure (including through academia-business collaboration),...

Pulse electrodeposition Nova 2.0 Metrohm Autolab B.V.

Aliona Nicolenco
The recipe allows to set up a pulsed electrodeposition using Nova 2.0 Metrohm Autolab B.V. File extension .nox. The following parameters can be adjusted: Number of steps Duration, interval time, and electrodeposition potential for each step Number of repeats

Gendered Difference in Motivation Profiles, Achievement and STEM Aspiration of Elementary School Students - Mplus syntax

Kezia Olive
This is a collection of Mplus script of analysis for my project Gendered Difference in Motivation Profiles, Achievement and STEM Aspiration of Elementary School Students.
In this project, I work with a dataset of Finnish elementary school students’ motivational beliefs (Subjective Task Value/STV and Self-concept of ability/SCA) towards math, science and Finnish in the last two years of elementary school; Grade 5 and 6.
This study investigated the person-oriented patterns of students’ motivational beliefs in...

Korrektur publizierter Forschungsdatensätze im OstData-Repositorium

Sandra König & Arnošt Štanzel
In der vorliegenden Handreichung werden die Workflows zur Bearbeitung von Korrekturen an publizierten Forschungsdatensätzen im Rahmen des OstData-Forschungsdatenrepositoriums skizziert. Konkret werden die folgenden Schritte beschrieben: A: Eingang und Verarbeitung der Meldung von Korrekturen B: Korrekturen an den Metadaten eines Forschungsdatensatzes C: Korrekturen eines Forschungsdatensatzes Sonderfall: Löschen von Forschungsdatensätzen

Questionnaire pour la préservation des œuvres de musique électroacoustique à Art Zoyd Studios

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Questionnaire destiné aux compositeurs pour la préservation des œuvres de musique électroacoustique produites et archivées à Art Zoyd Studios

Questionnaire pour la préservation des œuvres de musique électroacoustique à Art Zoyd Studios

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Questionnaire destiné aux compositeurs pour la préservation des œuvres de musique électroacoustique produites et archivées à Art Zoyd Studios

Single Cell Multiomics Data Analysis Workflow

Partha Chattopadhyay, Kriti Khare, Manish Davas, Pallavi Mishra, Alok Anand, Ranjeet Maurya, Rohit Gupta, Shweta Sahni, Ayushi Gupta, Saruchi Wadhwa, Aanchal Yadav, Priti Devi, Kishore Tardalkar, Meghnad Joshi, Tavpritesh Sethi & Rajesh Pandey
The pipeline uses the count matrix generated by BD Rhapsody WTA analysis pipeline to analyze the scRNA-seq data. The workflow is based on Seurat V4, and provides multimodal integrated analysis, where both RNA and surface marker analysis are performed, for multiple groups. The workflow also provides the automated cell type annotation, some basic visualization, gene set enrichment analysis at single cell level, and pseudotime/trajectory analysis using Monocle 3.

Protocol to implement economic experiments with urban consumers

Valentino Marini Govigli, Marco Setti, Matteo Ploner, Ginevra Marandola & Simone Piras
This document archives the protocols developed and used within the H2020 FoodLAND project to conduct behavioural economic experiments with samples of urban consumers in 5 African countries.

Best Practices for using tree-ring stable isotopes of Oxygen in paleoclimate and ecophysiology.

Soumaya Belmecheri, Alienor Lavergne, Milagros Rodriguez Caton, Paul Szejner & Valerie Daux
This R-Script describes best practices for using d18O forward modelling for paleoclimate and ecophysiological reconstructions. The script enable simulation of cellulose d18O in tree rings based on process-based models of leaf water evaporation and , and using various environmental input variables. Finally, it allows the assessment of the drivers of cellulose 18O variability based on a sensitivity analysis.

Code for reproducing meta-analysis presented in: \"Which are the most favourable conditions for reducing soil CO2 emissions with no-tillage? Results from a meta-analysis\"

Gabriele Mongiano
This script reproduces the meta-analytic workflow presented in the paper
“Which are the conditions where no-tillage reduces soil CO2 emissions?
Results from a meta-analysis”.

Subfunctionalisation of paralogous genes and evolution of differential codon usage preferences: the showcase of polypyrimidine tract binding proteins

Jérôme Bourret, Fanni Borvető & Ignacio G. Bravo
Dataset and scripts for the article "Subfunctionalisation of paralogous genes and evolution of differential codon usage preferences: the showcase of polypyrimidine tract binding proteins " Abstract Gene paralogs are copies of an ancestral gene that appear after gene or full genome duplication. When the two sister gene copies are maintained in the genome, redundancy may release certain evolutionary pressures, allowing one of them to access novel gene functions. Here we focused on the evolutionary...

Beratungen zum Forschungsdatenmanagement dokumentieren

Anna-Lena Körfer & Arnošt Štanzel
Die vorliegende Handreichung richtet sich an Datenexpert*innen, die Beratungen zum Forschungsdatenmanagement für Forschende anbieten. Das Dokument hilft dabei, diese strukturiert über den gesamten Datenlebenszyklus hinweg durchzuführen und zu dokumentieren. Dies erleichtert Forschenden die Forschungsarbeit und vereinfacht die erfolgreiche Publikation von Forschungsdaten.

Notebooks demonstrating colomoto.minibn for computing dynamics of Boolean networks with various update modes

LoÏc Paulevé & Sylvain Sené
Supplementary material to the chapter 6 "Boolean networks and their dynamics: the impact of updates" by Loïc Paulevé and Sylvain Sené of the book "Systems Biology Modelling and Analysis: Formal Bioinformatics Methods and Tools" (First Edition), edited by Elisabetta De Maria (Wiley, 2023). These notebooks demonstrate how to use the Python module colomoto.minibn for computing dynamics of Boolean networks with various updating modes. They can be visualized online at https://nbviewer.jupyter.org/github/pauleve/updating-modes-notebooks/ They can be executed and...

Therapeutic effect of herbal infusion on Abnormal Uterine Bleeding: consort flowchart and checklist

Mejda Selmi, , , , Maha Bben Ffreadj, Ridha Charfeddin & Hedi Khairi
This dataset contains the consort flowchart and checklist for the preliminary study

Xu_Nat Comm_2022: Version 1.0

This code accompanies Xu et al. "Immune-mediated tubule atrophy promotes acute kidney injury to chronic kidney disease transition". Nature Communications 2022.

Therapeutic effect of herbal infusion on Abnormal Uterine Bleeding: consort flowchart and checklist

Mejda Selmi, , , , Maha Bben Ffreadj, Ridha Charfeddin & Hedi Khairi
This dataset contains the consort flowchart and checklist for the preliminary study

McEvoy_Murphy Code V1

Caitriona M. McEvoy & Julia M. Murphy
This code accompanies "Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity".

Model and analysis workflow for paper \"A spatial agent-based model to disentangle environmental determinism and agglomeration effects in the emergence of settlement patterns\"

Kaarel Sikk
NetLogo model of settlement system formation and Jupyter notebooks containing model exploration as published in: Sikk, K; Caruso, G. 2022 "A spatial agent-based model to disentangle environmental determinism and agglomeration effects in the emergence of settlement patterns" To run The operation requires NetLogo modelling software and Jupyter Lab installed on your computer. Both files should be unpacked in one directory. Then .ipynb should be opened, configuration changed in the header, required python libraries installed. Following...

sanger-tol/readmapping v1.0.0 - Ukrainian Ironbelly

Priyanka Surana & Matthieu Muffato
Initial release of sanger-tol/readmapping, created with the nf-core template. Major Enhancements HiC and Illumina read alignment to genome PacBio CLR and CCS read alignment to genome after filtering Nanopore read alignment to genome Mark duplicates for HiC and Illumina alignments Convert to CRAM and calculate statistics for all alignments

Reviewing Education Videos: University Students Project of Curriculum Component and Philosophy

Thobias Sarbunan
This data contains videos related to student independent projects in evaluating several videos related to curriculum components and philosophy, which are in Indonesian, independent projects represent student responses and understanding of one of the topics related to curriculum courses, so the addresses of the fourteenth The video is adapted from the YouTube address as follows. In addition, curriculum philosophy also studied in several videos, so each group will review both topics, namely components and philosophy...

Reviewing Education Videos: University Students Project of Curriculum Component and Philosophy

Thobias Sarbunan
This data contains videos related to student independent projects in evaluating several videos related to curriculum components and philosophy, which are in Indonesian, independent projects represent student responses and understanding of one of the topics related to curriculum courses, so the addresses of the fourteenth The video is adapted from the YouTube address as follows. In addition, curriculum philosophy also studied in several videos, so each group will review both topics, namely components and philosophy...

HiFi Full-length 16S Workflow Databases

Khi Pin Chua
This contains the databases needed for the pb-16S-nf workflow. silva_nr99_v138.1_wSpecies_train_set.fa.gz is downloaded from https://zenodo.org/record/4587955 GTDB_bac120_arc122_ssu_r202_fullTaxo.fa.gz is downloaded from https://zenodo.org/record/4735821 RefSeq_16S_6-11-20_RDPv16_fullTaxo.fa.gz is downloaded from https://zenodo.org/record/4735821 silva-138-99-seqs.qza and silva-138-99-tax.qza are downloaded from https://docs.qiime2.org/2022.2/data-resources/ GTDB_ssu_all_r207.qza is obtained by first downloading https://data.gtdb.ecogenomic.org/releases/release207/207.0/genomic_files_all/ssu_all_r207.tar.gz, then a simple command was used to obtain the taxonomy information from the FASTA header: grep "^>" GTDB_ssu_all_r207.fna | awk '{print gensub(/^>(.*)/, "\\1", "g", $1),gensub(/^>.*\ (d__.*)\ \[.*\[.*\[.*/, "\\1", "g", $0)}' OFS=$'\t' > GTDB_ssu_all_r207.taxonomy.tsv The FASTA file and...

Species Distribution Models behind the work of deJong et al. \"brown bear population-genomics revises a classic postglacial expansion model\"

Aidin Niamir & Menno J. de Jong
SDMs behind the
Brown bear population-genomics revises a classic postglacial expansion model

Metagenomics of Parkinson's disease implicates the gut microbiome in multiple disease mechanisms

Zachary D Wallen, Ayse Demirkan, Guy Twa, Gwendolyn Cohen, Marissa N Dean, David G Standaert, Timothy Sampson & Haydeh Payami
This Zenodo archive is no longer active. Please refer to this Zenodo archive: https://zenodo.org/record/7246185.

Metagenomics of Parkinson's disease implicates the gut microbiome in multiple disease mechanisms

Zachary D Wallen, Ayse Demirkan, Guy Twa, Gwendolyn Cohen, Marissa N Dean, David G Standaert, Timothy Sampson & Haydeh Payami
This Zenodo archive is no longer active. Please refer to this Zenodo archive: https://zenodo.org/record/7246185.

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