6,808 Works

Centruroides sculpturatus isolate:CEXI.00-Female Genome sequencing

BGI
Whole genome assembly of Bark scorpion (Centruroides sculpturatus) as part of the BCM-HGSC i5k Pilot Project

Genomic data of Nanmaohu Park vascular plant specimen, RL0404

Huan Liu, Jinpu Wei, Ting Yang, Weixue Mu, Bo Song, Tuo Yang, Yuan Fu, Xuebin Wang, Guohai Hu, Wangsheng Li, Hongcheng Zhou, Yue Chang, Xiaoli Chen, Hongyun Chen, Le Cheng, Xuefei He, Hechen Cai, Xianchu Cai, Mei Wang, Yang Li, Jinlong Yang, Yu Wang, Ranchang Mu, Jie Liu, Jianming Zhao … & Xin Liu

Salmonella enterica subsp. enterica serovar Enteritidis Genome sequencing

BGI
Whole genome sequencing to characterize an important and prevalent foodborne pathogen

Lateolabrax maculatus Raw sequence reads

BGI
Lateolabrax maculatus

Genomic data of Nanmaohu Park vascular plant specimen, RL0875

Huan Liu, Jinpu Wei, Ting Yang, Weixue Mu, Bo Song, Tuo Yang, Yuan Fu, Xuebin Wang, Guohai Hu, Wangsheng Li, Hongcheng Zhou, Yue Chang, Xiaoli Chen, Hongyun Chen, Le Cheng, Xuefei He, Hechen Cai, Xianchu Cai, Mei Wang, Yang Li, Jinlong Yang, Yu Wang, Ranchang Mu, Jie Liu, Jianming Zhao … & Xin Liu

Ion torrent sequencing of S.pyogenes isolates

BGI
Ion torrent sequencing of S.pyogenes isolates

Genomic data of Nanmaohu Park vascular plant specimen, RL0122

Huan Liu, Jinpu Wei, Ting Yang, Weixue Mu, Bo Song, Tuo Yang, Yuan Fu, Xuebin Wang, Guohai Hu, Wangsheng Li, Hongcheng Zhou, Yue Chang, Xiaoli Chen, Hongyun Chen, Le Cheng, Xuefei He, Hechen Cai, Xianchu Cai, Mei Wang, Yang Li, Jinlong Yang, Yu Wang, Ranchang Mu, Jie Liu, Jianming Zhao … & Xin Liu

Bareilly outbreak

BGI
Genome sequencing project

The genomic sequence of the Chinese hamster ovary (CHO) K1 cell line (Cricetulus griseus)

X Xu, H Nagarajan, NE Lewis, S Pan, Z Cai, X Liu, W Chen, M Xie, W Wang, S Hammond, MR Andersen, N Neff, B Passarelli, W Koh, HC Fan, J Wang, Y Gui, KH Lee, MJ Betenbaugh, Quake, I Famili, BO Palsson & J Wang
Chinese hamster ovary (CHO) K1 cells are a cell line cultured from the ovary of the Chinese hamster (Cricetulus griseus). CHO cells are often used in biological and medical studies and commercially in the production of therapeutic proteins, which contribute significantly to the $100 billion biopharmaceutical market. BGI sequenced the CHO K1 genome genome using next-generation sequencing technology, assembling a 2.45G genome with 24,383 predicted genes.

Genomic data of the White throated tinamou (Tinamus guttatus)

G Zhang, B Li, C Li, MTP Gilbert, E Jarvis, The Avian Genome Consortium & J. Wang
The White-throated Tinamou (Tinamus guttatus) is a native bird to the Amazon rain forest in Brazil, southern Venezuela, eastern Peru, northern Bolivia, southeastern Colombia and northeastern Ecuador. It belongs to the Tinamidae family, and eats fruit off the ground or low-lying bushes, as well as flower buds, invertebrates, seeds and leaves. These data have been produced as part of the avian phylogenomic project. DNA from the Tinamus guttatus was collected in the Loreto Department, Peru....

Rsequencing of five pairs of Childhood B-ALL twins

BGI
We sequenced the WGS of five pairs of Childhood B-ALL twins

Genomic data from the domestic pigeon (Columba livia)

C Li, G Zhang, T Gilbert & T Wang
The domestic pigeon (Columba livia domestica) is one of the most common birds on planet Earth, located on every continent besides Antarctica. The sub-species sequenced was a breed known as the Danish Tumbler, a show pigeon with a distinct color markings. The domestic pigeon genome sequence provides a better understanding of such a widespread creature, including certain mechanisms that scientists still fail to understand fully, such as the magnetosensitivity. The sequencing data also presents insight...

Peer review of "MetaLIMS, A Simple Open-Source Laboratory Information Management System for Small Metagenomic Labs"

Robert Davey
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

HX1

BGI
Various sequencing data sets on HX1.

Anas platyrhynchos Transcriptome or Gene expression

BGI
revealing the trancriptome basis underlying excessive adiposity in ducks

Supporting data for "GenPipes: an open-source framework for distributed and scalable genomic analyses"

Caron Bryan, Morais David, Bujold David, Henrion Edouard, Mercier Eloi, Gonzalez Emmanuel, Lefebvre Francois, Leveque Gary, Bourque Guillaume, Fillon Joel, Sandoval Johanna, Tremblay Julien, Chen Chung Kuang, Letourneau Louis, Michaud Marc, Bourgey Mathieu, Caron Maxime, Marquis Pascale, Van Tran Patrick, Quirion Pierre-Olivier, Eveleigh Robert, Dali Rola & Shao Xiaojian
With the decreasing cost of sequencing and the rapid developments in genomics technologies and protocols, the need for validated bioinformatics software that enables efficient large-scale data processing is growing. Here we present GenPipes, a flexible Python-based framework that facilitates the development and deployment of multi-step workflows optimized for High Performance Computing clusters and the cloud. GenPipes already implements 12 benchmarked and scalable pipelines for various genomics applications, including RNA-Seq, ChIP-Seq, DNA-Seq, Methyl-Seq, Hi-C, capture Hi-C,...

Bareilly outbreak

BGI
Genome sequencing project

Gsuite HyperBrowser version20b

Boris Simovski, Daniel Vodak, Sveinung Gundersen, Diana Domanska, Abdulrahman Azab, Lars Holden, Marit Holden, Ivar Grytten, Knut Rand, Finn Drablos, Morten Johansen, Antonio Mora, Christin Lund-Andersen, Bastian Fromm, Ragnhild Eskeland, Odd Stokke Gabrielsen, Egil Ferkingstad, Sigve Nakken, Mads Bengtsen, Alexander Johan Nederbragt, Hildur Sif Thorarensen, Johannes Andreas Akse, Ingrid Glad, Eivind Hovig & Geir Kjetil Sandve
Recent large-scale undertakings such as ENCODE and Roadmap Epigenomics have generated experimental data mapped to the human reference genome (as genomic tracks) representing a variety of functional elements across a large number of cell types. Despite the high potential value of these publicly available data for a broad variety of investigations, little attention has been given to the analytical methodology necessary for their widespread utilisation. We here present a first principled treatment of the analysis...

Foodborne Pathogen Survey

BGI
Genome Sequencing Project

Image data of Nanmaohu Park vascular plant specimen, RL0835

Huan Liu, Jinpu Wei, Ting Yang, Weixue Mu, Bo Song, Tuo Yang, Yuan Fu, Xuebin Wang, Guohai Hu, Wangsheng Li, Hongcheng Zhou, Yue Chang, Xiaoli Chen, Hongyun Chen, Le Cheng, Xuefei He, Hechen Cai, Xianchu Cai, Mei Wang, Yang Li, Jinlong Yang, Yu Wang, Ranchang Mu, Jie Liu, Jianming Zhao … & Xin Liu

Foodborne Pathgen Survey

BGI
Genome sequencing project

Genomic data of Nanmaohu Park vascular plant specimen, RL0632

Huan Liu, Jinpu Wei, Ting Yang, Weixue Mu, Bo Song, Tuo Yang, Yuan Fu, Xuebin Wang, Guohai Hu, Wangsheng Li, Hongcheng Zhou, Yue Chang, Xiaoli Chen, Hongyun Chen, Le Cheng, Xuefei He, Hechen Cai, Xianchu Cai, Mei Wang, Yang Li, Jinlong Yang, Yu Wang, Ranchang Mu, Jie Liu, Jianming Zhao … & Xin Liu

Peer review of "A single mini-barcode test to screen for Australian mammalian predators from environmental samples"

Stephane Boyer
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Registration Year

  • 2011
    28
  • 2012
    13
  • 2013
    21
  • 2014
    91
  • 2015
    396
  • 2016
    241
  • 2017
    549
  • 2018
    3,457
  • 2019
    2,012

Resource Types

  • Dataset
    4,472
  • Text
    2,336

Data Centers

  • CGA
    3,468
  • GigaDB
    3,340