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Additional file 5: of HirBin: high-resolution identification of differentially abundant functions in metagenomes

Tobias ÖSterlund, Viktor Jonsson & Erik Kristiansson
Table showing the number of bins and sub-bins at different sequence identity cutoffs for the Qin [25] dataset. (XLSX 8 kb)

Additional file 6: Figure S3. of Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth

Lydgia Jackson, Michael Day, Jennie Allen, Edgar Scott & David Dyer
Fe dependent NrrF regulated Nrs sRNAs; primer extensions and Northern blot analysis. (DOCX 611 kb)

MOESM1 of Long-term slow slip events along the Nankai trough subduction zone after the 2011 Tohoku earthquake in Japan

Shinzaburo Ozawa
Additional file 1. AIC as a function of n (degree of polynomial function) and m (degree of trigonometric functions) (see text) for the position time series at site 0437, whose location is shown in Fig. 1b. The contour interval is -40. We estimate the optimal n and m that minimize AIC.

Additional file 4: Table S2. of A highly pathogenic simian/human immunodeficiency virus effectively produces infectious virions compared with a less pathogenic virus in cell culture

Shoya Iwanami, Yusuke Kakizoe, Satoru Morita, Tomoyuki Miura, Shinji Nakaoka & Shingo Iwami
Fitted initial (tâ =â 0) values for the in vitro experiment by the nonlinear least squared methods. (PDF 64 kb)

The phylogeny of fossil whip spiders

Russell Garwood, Jason Dunlop, Brian Knecht & Thomas Hegna
Abstract Background Arachnids are a highly successful group of land-dwelling arthropods. They are major contributors to modern terrestrial ecosystems, and have a deep evolutionary history. Whip spiders (Arachnida, Amblypygi), are one of the smaller arachnid orders with ca. 190 living species. Here we restudy one of the oldest fossil representatives of the group, Graeophonus anglicus Pocock, 1911 from the Late Carboniferous (Duckmantian, ca. 315 Ma) British Middle Coal Measures of the West Midlands, UK. Using X-ray...

Additional file 4: of HirBin: high-resolution identification of differentially abundant functions in metagenomes

Tobias Österlund, Viktor Jonsson & Erik Kristiansson
Figure showing the sub-bin profile for all sub-bins in the two example bins in Fig. 3. (PDF 4 kb)

Additional file 2: Figure S1. of Health care public reporting utilization â user clusters, web trails, and usage barriers on Germanyâ s public reporting portal Weisse-Liste.de

Christoph Pross, Lars-Henrik Averdunk, Josip Stjepanovic, Reinhard Busse & Alexander Geissler
Navigational trail for user group Intensive Work Timers (19% of users). The figure depicts the navigation trail for the specific user subgroup Intensive Work Timers, indicating clicks per topics area (bubble size), absolute number of transitions (arrow width) and share of transitions away from respective topic areas (arrow grayscale). (TIF 875 kb)

Additional file 2: of HirBin: high-resolution identification of differentially abundant functions in metagenomes

Tobias ÖSterlund, Viktor Jonsson & Erik Kristiansson
Figure showing the mean abundances of the bins that are significant at the bin level. (PDF 5 kb)

Production of high-concentration n-caproic acid from lactate through fermentation using a newly isolated Ruminococcaceae bacterium CPB6

Xiaoyu Zhu, Yan Zhou, Yi Wang, Tingting Wu, Xiangzhen Li, Daping Li & Yong Tao
Abstract Background n-Caproic acid (CA), as a medium-chain carboxylic acid, is a valuable chemical feedstock for various industrial applications. The fermentative production of CA from renewable carbon sources has attracted a lot of attentions. Lactate is a significant intermediate waste in the anaerobic breakdown of carbohydrates that comprise 18–70% of the chemical oxygen demand (COD) in municipal and some industrial wastewaters. Recently, researchers (including our own group) reported the CA production using lactate as electron...

Additional file 4: Figure S2. of Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth

Lydgia Jackson, Michael Day, Jennie Allen, Edgar Scott & David Dyer
Fe regulated Nrf sRNAs; primer extensions and Northern blot analysis. (DOCX 1051 kb)

Additional file 3: of The phylogeny of fossil whip spiders

Russell Garwood, Jason Dunlop, Brian Knecht & Thomas Hegna
File format:.tnt (see [45]). Title: Cladistic matrix. Description: Cladistic matrix used in the current analysis, in a TNT ready format. (TNT 44 kb)

Additional file 3: of HirBin: high-resolution identification of differentially abundant functions in metagenomes

Tobias ÖSterlund, Viktor Jonsson & Erik Kristiansson
Results from the gene set enrichment analysis of GO-terms for bins and sub-bins. (XLSX 584 kb)

Additional file 2: of The phylogeny of fossil whip spiders

Russell Garwood, Jason Dunlop, Brian Knecht & Thomas Hegna
File format:.pdf. Title: Character statements. Description: Morphological characters statements for the characters used in the current analysis. (PDF 507 kb)

MOESM2 of Production of high-concentration n-caproic acid from lactate through fermentation using a newly isolated Ruminococcaceae bacterium CPB6

Xiaoyu Zhu, Yan Zhou, Yi Wang, Tingting Wu, Xiangzhen Li, Daping Li & Yong Tao
Additional file 2: Figure S1. SEM image of Ruminococcaceae bacterium CPB6. Figure S2. Effects of pH and temperature on strain CPB6 growth and its influence on caproate production rate at 96 h: growth A (pH) and B (temperature); caproate production rate: C (pH) and D (temperature). Figure S3. pH values before and after the reaction. Figure S4. Caproic acid (CA) recovery from lactate-containing wastewater by strain CPB6 under sterilized conditions. The fermentation was started using the...

Additional file 3: Figure S1. of Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth

Lydgia Jackson, Michael Day, Jennie Allen, Edgar Scott & David Dyer
Fur box consensus sequence representing the Fur DNA-binding region in FA 1090 generated by Weblogo. (DOCX 100 kb)

Additional file 3 Table S1. of A highly pathogenic simian/human immunodeficiency virus effectively produces infectious virions compared with a less pathogenic virus in cell culture

Shoya Iwanami, Yusuke Kakizoe, Satoru Morita, Tomoyuki Miura, Shinji Nakaoka & Shingo Iwami
Parameter values for the in vitro experiment by the nonlinear least squared methods. (PDF 57 kb)

Additional file 1: of The phylogeny of fossil whip spiders

Russell Garwood, Jason Dunlop, Brian Knecht & Thomas Hegna
File format:.vaxml (see [38]). Title: Tomographic reconstruction of Graeophonus anglicus Pocock, 1911. Description: A 3D mesh model of Graeophonus anglicus in the VAXML interchange format. (ZIP 45.3 mb)

Additional file 2: Table S2. of Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth

Lydgia Jackson, Michael Day, Jennie Allen, Edgar Scott & David Dyer
List of the 340 candidate sRNAs reported in FA 1090 at 1, 2, 3, 4, and 5 h in Fe minus and Fe plus growth conditions. (XLSX 90 kb)

Additional file 1: of HirBin: high-resolution identification of differentially abundant functions in metagenomes

Tobias ÖSterlund, Viktor Jonsson & Erik Kristiansson
Results from the statistical analysis of bins and sub-bins for the t2d (Qin [24]) dataset. (XLSX 2318 kb)

Additional file 1: Table S1. of Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth

Lydgia Jackson, Michael Day, Jennie Allen, Edgar Scott & David Dyer
Complete list of all reads in FA 1090 from Rockhopper analysis at 1, 2, 3, 4, and 5 hrs in Fe minus and Fe plus growth conditions. Representative growth curves for FA 1090, LJ001 nrrf mutant strain and NrrF complemented strain LJ002. (XLSX 302 kb)

Additional file 10: of HirBin: high-resolution identification of differentially abundant functions in metagenomes

Tobias ÖSterlund, Viktor Jonsson & Erik Kristiansson
Table showing selected samples from the Qin [25] study for the resampling analysis. (XLSX 8 kb)

Additional file 11: Table S6. of Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth

Lydgia Jackson, Michael Day, Jennie Allen, Edgar Scott & David Dyer
List of the strains and the primers used in this study for real time PCR, primer extension, and Northern blot. (DOCX 18 kb)

Additional file 2: Table S1. of Regular recreational physical activity and risk of head and neck cancer

Chen-Lin Lin, Wei-Ting Lee, Chun-Yen Ou, Jenn-Ren Hsiao, Cheng-Chih Huang, Jehn-Shyun Huang, Tung-Yiu Wong, Ken-Chung Chen, Sen-Tien Tsai, Sheen-Yie Fang, Tze-Ta Huang, Jiunn-Liang Wu, Yuan-Hua Wu, Wei-Ting Hsueh, Chia-Jui Yen, Yu-Hsuan Lai, Hsiao-Chen Liao, Shang-Yin Wu, Ming-Wei Yang, Forn-Chia Lin, Jang-Yang Chang, Yi-Hui Wang, Ya-Ling Weng, Han-Chien Yang, Yu-Shan Chen … & Jeffrey Chang
The association between regular recreational physical activity and cancers of tonsil and tongue base and other pharyngeal cancers. This supplementary table examines the association between regular recreational physical activity and head and neck cancer sites by the association with human papillomavirus. (DOC 75 kb)

Regular recreational physical activity and risk of head and neck cancer

Chen-Lin Lin, Wei-Ting Lee, Chun-Yen Ou, Jenn-Ren Hsiao, Cheng-Chih Huang, Jehn-Shyun Huang, Tung-Yiu Wong, Ken-Chung Chen, Sen-Tien Tsai, Sheen-Yie Fang, Tze-Ta Huang, Jiunn-Liang Wu, Yuan-Hua Wu, Wei-Ting Hsueh, Chia-Jui Yen, Yu-Hsuan Lai, Hsiao-Chen Liao, Shang-Yin Wu, Ming-Wei Yang, Forn-Chia Lin, Jang-Yang Chang, Yi-Hui Wang, Ya-Ling Weng, Han-Chien Yang, Yu-Shan Chen … & Jeffrey Chang
Abstract Background Although substantial evidence supports a 20–30% risk reduction of colon cancer, breast cancer, and endometrial cancer by physical activity (PA), the evidence for head and neck cancer (HNC) is limited. Three published studies on the association between PA and HNC have generated inconsistent results. The current study examined the association between recreational PA (RPA) and HNC risk with a more detailed assessment on the intensity, frequency, duration, and total years of RPA. Methods...

The prognostic value of the preoperative c-reactive protein/albumin ratio in ovarian cancer

Yubo Liu, Shengfu Chen, Chengyu Zheng, Miao Ding, Lan Zhang, Liangan Wang, Meiqing Xie & Jianhua Zhou
Abstract Background Inflammation plays an important role in the pathogenesis of ovarian cancer. This study sought to investigate the association between the preoperative c-reactive protein/albumin ratio (CRP/Alb) and oncological outcomes in ovarian cancer patients. Methods Two hundred patients with histologically verified ovarian cancer between June 2006 and July 2012 were retrospectively reviewed. Overall survival was evaluated by the Kaplan–Meier method and log-rank test. The significance of risk factors for overall survival was evaluated with the...

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