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MOESM1 of Development and evaluation of an efficient heterologous gene knock-in reporter system in Lactococcus lactis

Yifei Lu, Hongxiang Yan, Jiezhong Deng, Zhigang Huang, Xurui Jin, Yanlan Yu, Qiwen Hu, Fuquan Hu & Jing Wang
Additional file 1. Additional tables and figures.

Additional file 2: Table S1. of The role of the two-component systems Cpx and Arc in protein alterations upon gentamicin treatment in Escherichia coli

Emina Ćudić, Kristin Surmann, Gianna Panasia, Elke Hammer & Sabine Hunke
Proteome profile of E. coli MG1655 and its isogenic cpxAR mutant with and without incubation with 5 μg ml−1 gentamicin. (XLSX 882 kb)

Additional file 1:Fig. S1 of Data integration from pathology slides for quantitative imaging of multiple cell types within the tumor immune cell infiltrate

Zhaoxuan Ma, Stephen Shiao, Emi Yoshida, Steven Swartwood, Fangjin Huang, Michael Doche, Alice Chung, Beatrice Knudsen & Arkadiusz Gertych
Visualization of staining components used to generate a 3-D cell density map of cancer areas. (a) A whole-slide multicolor RGB bright-field image of breast cancer tissue stained for CD45 (brown), Pan-CK (red) and a hematoxylin nuclear counter-stain (blue). (b-d) The whole-slide multicolor RGB image was color-deconvoluted to separate the staining components: (b) CD45+ image, (c) Pan-CK+ image, and (d) hematoxylin image. (e) A 3-D cell density map of Pan-CK-positive cells (which demarcates areas of epithelial...

Characterization of a secreted cystatin of the parasitic nematode Haemonchus contortus and its immune-modulatory effect on goat monocytes

Yujian Wang, Lingyan Wu, Xinchao Liu, Shuai Wang, Muhammad Ehsan, RuoFeng Yan, XiaoKai Song, LiXin Xu & XiangRui Li
Abstract Background Haemonchosis is a disease of the small ruminant caused by a nematode parasite Haemonchus contortus, and it is most important and alarming challenges to the small ruminant’s production. The infection of the H. contortus could cause high economic losses worldwide. H. contortus is a blood feeding parasite which penetrates into the abomasal mucosa to feed the blood of the host and causing the anemia and decreased total plasma protein. Modulation and suppression of...

Additional file 1 of Mitochondrial genomes reveal recombination in the presumed asexual Fusarium oxysporum species complex

Balรกzs Brankovics, Peter Van Dam, Martijn Rep, G. Sybren De Hoog, Theo A. J. Van Der Lee, Cees Waalwijk & Anne D. Van Diepeningen
Strains analyzed and accession numbers of the NGS data used. (XLSX 9 kb)

Additional file 1: Table S1. of Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

Y. Daguerre, E. Levati, J. Ruytinx, E. Tisserant, E. Morin, A. Kohler, B. Montanini, S. Ottonello, A. Brun, C. Veneault-Fourrey & F. Martin
List of L. bicolor TFs identified in silico displaying similarities with characterized TFs (183 proteins); sharing similarities with predicted or hypothetical proteins with no proved role as transcriptional regulators (94 proteins); sharing similarities with proteins identified as transcriptional regulators without DBD (8 proteins). General information of protein is given (e.g., protein ID from both L. bicolor genome version 1 and version 2, length of the polypeptide, TF name, EST support). Accession number, Description, Species, %...

Additional file 1: Figure S1. of Endoplasmic reticulum stress cooperates with Toll-like receptor ligation in driving activation of rheumatoid arthritis fibroblast-like synoviocytes

Pawel Kabala, Chiara Angiolilli, Nataliya Yeremenko, Aleksander Grabiec, Barbara Giovannone, Desiree Pots, Timothy Radstake, Dominique Baeten & Kris Reedquist
Tunicamycin treatment results in ER stress induction with gene expression pattern similar to that caused by thapsigargin. (TIF 295 kb)

Additional file 1: Figure S1. of Characterization of a secreted cystatin of the parasitic nematode Haemonchus contortus and its immune-modulatory effect on goat monocytes

Yujian Wang, Lingyan Wu, Xinchao Liu, Shuai Wang, Muhammad Ehsan, RuoFeng Yan, XiaoKai Song, LiXin Xu & XiangRui Li
The proteinase inhibition assays of his-tagged protein as control. (DOCX 162 kb)

Effect of silicon supplementation on growth and metabolism of strawberry plants at three developmental stages

Roghieh Hajiboland, Narges Moradtalab, Zarrin Eshaghi & Javad Feizy
The effect of silicon (Si) was studied in strawberry (Fragaria × ananassa) plants grown under greenhouse conditions and harvested at vegetative, flowering and fruiting stages. Vegetative growth and fruit dry weight were improved by Si. The concentration of carbohydrates decreased in the leaves but increased in the roots upon Si treatment. However, the level of the soluble protein pool increased in both leaves and roots at the expense of free amino acids at all three...

Effect of silicon supplementation on growth and metabolism of strawberry plants at three developmental stages

Roghieh Hajiboland, Narges Moradtalab, Zarrin Eshaghi & Javad Feizy
The effect of silicon (Si) was studied in strawberry (Fragaria × ananassa) plants grown under greenhouse conditions and harvested at vegetative, flowering and fruiting stages. Vegetative growth and fruit dry weight were improved by Si. The concentration of carbohydrates decreased in the leaves but increased in the roots upon Si treatment. However, the level of the soluble protein pool increased in both leaves and roots at the expense of free amino acids at all three...

Country-level relationship between GDP growth rates and governance

Tatsuya Amano
Relationship between gross domestic product (GDP) growth rates (https://data.worldbank.org/indicator/NY.GDP.MKTP.KD.ZG) and the effectiveness of governance (measured by the Worldwide Governance Indicators by the World Bank: https://data.worldbank.org/data-catalog/worldwide-governance-indicators) in 2014. Countries in orange are those with less effective governance and rapid economic growth.

Country-level relationship between GDP growth rates and governance

Tatsuya Amano
Relationship between gross domestic product (GDP) growth rates (https://data.worldbank.org/indicator/NY.GDP.MKTP.KD.ZG) and the effectiveness of governance (measured by the Worldwide Governance Indicators by the World Bank: https://data.worldbank.org/data-catalog/worldwide-governance-indicators) in 2014. Countries in orange are those with less effective governance and rapid economic growth.

Data Set for Optics Express submission: Trade-offs between structural integrity and acquisition time in stochastic super-resolution microscopy techniques

Jean-Francois Rupprecht
Dataset associated with the submission: Trade-offs between structural integrity and acquisition time in stochastic super-resolution microscopy techniques, by Jean-Francois Rupprecht, Ariadna Martinez-Marrades, Zhen Zhang, Rishita Changede, Pakorn Kanchanawong, and Gilles Tessier (Dated: April 11, 2017)

1) Data_File_1_STORM_Ax647 & Data_File_2_STORM_tdEos: 2 sequences of localization from labelled tubulin; with Alexa Fluor and with tEoS.

2) Data_File_3_TIRM: sequence of localization events of gold particles.

3) Data_File_4_PALM_silane_1: 2 sequences of localization from a functionalized silane coverslip events.

Data related to microbiology-related papers indexed in PubMed

Patrick Schloss
Processed data used in Schloss et al. (2016) to characterize publishing trends for microbiology-related papers. Methods for generating the data can be found in https://github.com/SchlossLab/Schloss_SocietyJs_mBio_2017.
These data were published by Schloss, Johnston, and Casadevall in their mBio editorial: Support Science by Publishing in Scientific Society Journals

Create Online Researcher’s Profile to Increase Visibility

Nader Ale Ebrahim
Creating and maintaining online profiles will help you to see the impact of your research outputs' on the research community and greater public. Online profiles is an essential tool to disseminate your research and publications. Scholarly identifiers and online profiles like ResearcherID and ORCiD provide a solution to the author ambiguity problem within the scholarly research community. They can also help you to track and measure the impact of your scholarly research publications. Google Scholar...

Create Online Researcher’s Profile to Increase Visibility

Nader Ale Ebrahim
Creating and maintaining online profiles will help you to see the impact of your research outputs' on the research community and greater public. Online profiles is an essential tool to disseminate your research and publications. Scholarly identifiers and online profiles like ResearcherID and ORCiD provide a solution to the author ambiguity problem within the scholarly research community. They can also help you to track and measure the impact of your scholarly research publications. Google Scholar...

Making Peer Review More Transparent with Open Annotation

Heather Staines & 0000-0003-3876-1182
ORCID are committed to enabling recognition of peer review in all its forms. Annotation is increasingly being used as a type of peer review, both pre- and post-publications. This blog post by Heather Staines, Director of Partnerships at ORCID member Hypothesis, explains more about what it is and why it's important.

Making Peer Review More Transparent with Open Annotation

Heather Staines & 0000-0003-3876-1182
ORCID are committed to enabling recognition of peer review in all its forms. Annotation is increasingly being used as a type of peer review, both pre- and post-publications. This blog post by Heather Staines, Director of Partnerships at ORCID member Hypothesis, explains more about what it is and why it's important.

Organization Identifier Working Group: Update

Haak Laurel
The Organization Identifier (OrgID) Working Group was established as a joint effort by Crossref, DataCite and ORCID in January 2017. The Working Group was charged with refining the structure, principles, and technology specifications for an open organization identifier registry to facilitate the disambiguation of researcher affiliations. The group has been working in three interdependent areas: Governance, Registry Product Definition, and Business Model, and has released for public comment its findings and recommendations for governance and...

Organization Identifier Working Group: Update

Haak Laurel
The Organization Identifier (OrgID) Working Group was established as a joint effort by Crossref, DataCite and ORCID in January 2017. The Working Group was charged with refining the structure, principles, and technology specifications for an open organization identifier registry to facilitate the disambiguation of researcher affiliations. The group has been working in three interdependent areas: Governance, Registry Product Definition, and Business Model, and has released for public comment its findings and recommendations for governance and...

Peer review in the ORCID community

Alainna Therese Wrigley
To celebrate Peer Review Week 2017, we organized a webinar on the ORCID peer review functionality, now available to all members using ORCID API 2.0. We presented statistics on the uptake of peer review on ORCID records, and invited four members to share how they were - or will be - using the peer review functionality in their systems: REMARQ (RedLink), ACS Reviewer Lab (American Chemical Society), Editorial Manager (Aries Systems), and ScholarOne Manuscripts (Clarivate...

Peer review in the ORCID community

Alainna Therese Wrigley
To celebrate Peer Review Week 2017, we organized a webinar on the ORCID peer review functionality, now available to all members using ORCID API 2.0. We presented statistics on the uptake of peer review on ORCID records, and invited four members to share how they were - or will be - using the peer review functionality in their systems: REMARQ (RedLink), ACS Reviewer Lab (American Chemical Society), Editorial Manager (Aries Systems), and ScholarOne Manuscripts (Clarivate...

Peer Review at ORCID - An Update

Alice Meadows
Based on data that was first shared at the Eighth International Peer Review Congress in Chicago (September 10-12, 2017), this post reviews uptake of ORCID's peer review functionality since its release in 2015.

Peer Review at ORCID - An Update

Alice Meadows
Based on data that was first shared at the Eighth International Peer Review Congress in Chicago (September 10-12, 2017), this post reviews uptake of ORCID's peer review functionality since its release in 2015.

Blog | Celebrating #PeerRevWk17 at ORCID

Alice Meadows
Announcing ORCID's participation in the third annual Peer Review Week (September 11-17, 2017). ORCID is a founding organizations of the annual peer review event.

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