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Supplementary Material 3

Antoine Pasquali, Axel Cleeremans & Vinciane Gaillard
Sample code (C++/MFC) for generating refined RSOCs given a number of elements and a sequence length

Supplementary Material 3

Antoine Pasquali, Axel Cleeremans & Vinciane Gaillard
Sample code (C++/MFC) for generating refined RSOCs given a number of elements and a sequence length

Supplementary Material 2

Antoine Pasquali, Axel Cleeremans & Vinciane Gaillard
List of Reversible Socs with 5 elements and of length 10 with no reversal or a/de-scending runs

Supplementary Material 2

Antoine Pasquali, Axel Cleeremans & Vinciane Gaillard
List of Reversible Socs with 5 elements and of length 10 with no reversal or a/de-scending runs

Supplementary Material 1

Antoine Pasquali, Axel Cleeremans & Vinciane Gaillard
List of Reversible Socs with 6 elements and of length 12 with no reversal or a/de-scending runs

Supplementary Material 1

Antoine Pasquali, Axel Cleeremans & Vinciane Gaillard
List of Reversible Socs with 6 elements and of length 12 with no reversal or a/de-scending runs

Theoretical ribosomal protein mass fingerprint of Proteus mirabilis

Wenfa Ng
This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of Proteus mirabilis.

Theoretical ribosomal protein mass fingerprint of Proteus mirabilis

Wenfa Ng
This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of Proteus mirabilis.

Theoretical ribosomal protein mass fingerprint of Photobacterium phosphoreum

Wenfa Ng
This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of Photobacterium phosphoreum.

Theoretical ribosomal protein mass fingerprint of Photobacterium phosphoreum

Wenfa Ng
This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of Photobacterium phosphoreum.

Theoretical ribosomal protein mass fingerprint of Photobacterium damselae

Wenfa Ng
This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of Photobacterium damselae.

Theoretical ribosomal protein mass fingerprint of Photobacterium damselae

Wenfa Ng
This is a dataset containing the theoretical molecular mass of various ribosomal proteins in the large and small ribosome subunit of Photobacterium damselae.

Figure Data for "Feedback optimizes neural coding and perception of natural stimuli"

Chengjie Huang
Figure data with readme.txt for the manuscript entitled "Feedback optimizes neural coding and perception of natural stimuli" for review in eLife.

Exclusive α-helices in (α+β)+(α/β) proteins

Ivan Mazoni
Dataset containing physical-chemical and strucutural descriptors for exclusive α-helices and its flanking regions.
Only α-helices from (α+β)+(α/β) proteins are eligible for this dataset.
Data is organized into sections. Each section begins with the following header: length, pdb_name, chain_id, flag, position, [parameter].
length is the number of amino acid residues comprising the α-helix.
flag indicates the amino acid residue underlying region, namely: flanking region before the α-helix ().
[parameter]: paramater's value for the given amino acid residue. All parameters are extracted...

Exclusive α-helices in (α+β)+(α/β) proteins

Ivan Mazoni
Dataset containing physical-chemical and strucutural descriptors for exclusive α-helices and its flanking regions.
Only α-helices from (α+β)+(α/β) proteins are eligible for this dataset.
Data is organized into sections. Each section begins with the following header: length, pdb_name, chain_id, flag, position, [parameter].
length is the number of amino acid residues comprising the α-helix.
flag indicates the amino acid residue underlying region, namely: flanking region before the α-helix ().
[parameter]: paramater's value for the given amino acid residue. All parameters are extracted...

Non-exclusive α-helices in all-α proteins

Ivan Mazoni
Dataset containing physical-chemical and strucutural descriptors for non-exclusive α-helices and its flanking regions.
Only α-helices from all-α proteins are eligible for this dataset.
Data is organized into sections. Each section begins with the following header: length, pdb_name, chain_id, flag, position, [parameter].
length is the number of amino acid residues comprising the α-helix.
flag indicates the amino acid residue underlying region, namely: flanking region before the α-helix(<); α-helix (=); flanking region after the α-helix (>).
[parameter]: paramater's value for the...

Exclusive α-helices in all-α proteins

Ivan Mazoni
Dataset containing physical-chemical and strucutural descriptors for exclusive α-helices (only a single helical structure segment is present in the protein's whole structure) and its flanking regions.
Only alpha helices from all-α proteins are eligible for this dataset.

Data is organized into sections. Each section begins with the following header: length, pdb_name, chain_id, flag, position, [parameter].

length is the number of amino acid residues comprising the α-helix.
flag indicates the amino acid residue underlying region, namely: flanking region before the...

Global pairwise expression correlation analysis of S. mansoni genes

Elton Vasconcelos, Vinicius Mesel, Lucas DaSilva, David Pires, Guilherme Lavezzo, Adriana Pereira, Murilo Amaral & Sergio Verjovski-Almeida
A complete list encompassing all significantly correlated (p-value < 0.05, r > 0.5 or r < -0.5) pair of genes (Smp-Smp, Smp-SmLINC and SmLINC-SmLINC) expressed across five developmental stages of the parasite (cercariae, somula 3h, somula 24h, male and female). The first two columns are the IDs from the analyzed pair of genes, whereas the third and fourth ones are the Pearson correlation coefficient (r) and its p-value, respectively.

α-helices in all-α proteins

Ivan Mazoni
Dataset containing physical-chemical and strucutural descriptors for α-helices and its flanking regions.
Only α-helices from all-α proteins are eligible for this dataset.
Data is organized into sections. Each section begins with the following header: length, pdb_name, chain_id, flag, position, [parameter].
length is the number of amino acid residues comprising the α-helix.
flag indicates the amino acid residue underlying region, namely: flanking region before the α-helix(<); α-helix(=); flanking region after the α-helix(>).
[parameter]: paramater's value for the given amino acid residue....

Network Analysis Data.zip

Amy Brogan
Initial coding from individual networks (photographed) into excel (see combined data entry). Nodes assigned weights based on position in network. Edges assigned ranks by participants. Networks imported to Gephi for visualisation of networks.

Network Analysis Data.zip

Amy Brogan
Initial coding from individual networks (photographed) into excel (see combined data entry). Nodes assigned weights based on position in network. Edges assigned ranks by participants. Networks imported to Gephi for visualisation of networks.

The climatology of mixed layer depth in the Red Sea

Cheriyeri Poyil Abdulla, Mohammed Ali Alsaafani, Turki Metabe Alraddadi & Alaa Mohammed Albarakati
The climatology of mixed layer depth variability in the Red Sea is attached.

alpha-helices-all-alpha-proteins

Ivan Mazoni
Dataset containing physical-chemical and strucutural descriptors for alpha helices and its flanking regions.
Only alpha helices from all-alpha proteins are eligible for this dataset.
Data is organized into sections. Each section begins with the following header: length, pdb_name, chain_id, flag, position, [parameter].
length is the number of amino acid residues comprising the aplha helix.
flag indicates the amino acid residue underlying region, namely: flanking region before the alpha helix ().
[parameter]: paramater's value for the given amino acid residue. All...

α-helices in all-α proteins

Ivan Mazoni
Dataset containing physical-chemical and strucutural descriptors for α-helices and its flanking regions.
Only α-helices from all-α proteins are eligible for this dataset.
Data is organized into sections. Each section begins with the following header: length, pdb_name, chain_id, flag, position, [parameter].
length is the number of amino acid residues comprising the α-helix.
flag indicates the amino acid residue underlying region, namely: flanking region before the α-helix(<); α-helix(=); flanking region after the α-helix(>).
[parameter]: paramater's value for the given amino acid residue....

D. melanogaster predictions

Linh Tran, Tobias Hamp & Burkhard Rost
About this dataset: These are the most reliable 100,000 PPI predictions for D. melanogaster. It is a CSV file.
Motivation: Protein-protein interactions (PPIs) play a key role in many cellular processes. Most annotations of PPIs mix experimental and computational data. The mix optimizes coverage, but obfuscates the annotation origin. Some resources excel at focusing on reliable experimental data. Here, we focused on new pairs of interacting proteins for several model organisms based solely on sequence-based prediction...

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