figshare

United Kingdom of Great Britain and Northern Ireland

4,515 Works

Macro for automatic detection of spots on ladybird elytra and measurement of spot area

Danny Haelewaters, Thomas Hiller, Michał Gorczak & Donald H. Pfister
For each ladybird, we measured the area of the left elytron and calculated the percentage of the elytral area covered by black spots. For this purpose, we made images of all 160 left elytra. To develop an automated method measuring total elytral area and elytral area covered by spots as well as counting number of spots/left elytron, we designed a macro for the ImageJ platform and coded the script using IJM programming language on Fiji...

Macro for automatic detection of spots on ladybird elytra and measurement of spot area

Danny Haelewaters, Thomas Hiller, Michał Gorczak & Donald H. Pfister
For each ladybird, we measured the area of the left elytron and calculated the percentage of the elytral area covered by black spots. For this purpose, we made images of all 160 left elytra. To develop an automated method measuring total elytral area and elytral area covered by spots as well as counting number of spots/left elytron, we designed a macro for the ImageJ platform and coded the script using IJM programming language on Fiji...

R code

KOK YEW NGEW
R code for the project including risk ratio, sex ratio, heat map and data mining analyses.

R code

KOK YEW NGEW
R code for the project including risk ratio, sex ratio, heat map and data mining analyses.

Medical Image Segmenter (MIS)

Mahdi Saadatmand-Tarzjan & Mojtaba Masoudi
Medical Image Segmenter (MIS) is a software tool for semi-manual segmentation of 3D medical images in the DICOM format. The image should be acquired along the axial direction.
MIS facilitates the manual segmentation of medical images by using a segmentation algorithm based on thresholding and connected-component analysis.
The source codes and executable (EXE) file of MIS were uploaded as two RAR archive files. Also, there is a pictorial user manual for MIS as an extra PDF...

Medical Image Segmenter (MIS)

Mahdi Saadatmand-Tarzjan & Mojtaba Masoudi
Medical Image Segmenter (MIS) is a software tool for semi-manual segmentation of 3D medical images in the DICOM format. The image should be acquired along the axial direction.
MIS facilitates the manual segmentation of medical images by using a segmentation algorithm based on thresholding and connected-component analysis.
The source codes and executable (EXE) file of MIS were uploaded as two RAR archive files. Also, there is a pictorial user manual for MIS as an extra PDF...

Medical Image Segmenter (MIS)

Mahdi Saadatmand-Tarzjan & Mojtaba Masoudi
Medical Image Segmenter (MIS) is a software tool for semi-manual segmentation of 3D medical images in the DICOM format. The image should be acquired along the axial direction.
MIS facilitates the manual segmentation of medical images by using a segmentation algorithm based on thresholding and connected-component analysis.
The source codes and executable (EXE) file of MIS were uploaded as two RAR archive files. Also, there is a pictorial user manual for MIS as an extra PDF...

IMAGEJ MACRO

David Rousseau
The developed ImageJ Macro

IMAGEJ MACRO

David Rousseau
The developed ImageJ Macro

Plastic Cards

Josephin Simmons
Plastic Business Cards have become additional common among growing and established businesses in recent years. There ar variety of reasons why this can be thus. the first advantage of plastic business cards over the paper or cardboard business cards that everybody is employed to is that plastic cards are additional sturdy. Plastic cards are obtainable in a very type of designs and styles. you will be able to choose between Associate in Nursing assortment of...

Plastic Cards

Josephin Simmons
Plastic Business Cards have become additional common among growing and established businesses in recent years. There ar variety of reasons why this can be thus. the first advantage of plastic business cards over the paper or cardboard business cards that everybody is employed to is that plastic cards are additional sturdy. Plastic cards are obtainable in a very type of designs and styles. you will be able to choose between Associate in Nursing assortment of...

Protein alignment based on higher order conditional random fields for template-based modeling

Juan A. Morales-Cordovilla
MATERIAL AND PROGRAM USED IN THE PAPER
Juan A. Morales-Cordovilla, Victoria Sanchez Calle, Martin Ratajczak."Protein alignment based on higher order conditional random fields for template-based modeling".PLOS-ONE, 2018
You can find the following folders:
- Databases: all the list files used for training, validation and test.- Program: our binary Linux-Matlab16b program EstPdbAli (Estimate Pdb from Alignment) with an example of used.- Results: summary and detailed description of the results.- ForwBackPart: Matlab example that shows the computation of the...

Protein alignment based on higher order conditional random fields for template-based modeling

Juan A. Morales-Cordovilla
MATERIAL AND PROGRAM USED IN THE PAPER
Juan A. Morales-Cordovilla, Victoria Sanchez Calle, Martin Ratajczak."Protein alignment based on higher order conditional random fields for template-based modeling".PLOS-ONE, 2018
You can find the following folders:
- Databases: all the list files used for training, validation and test.- Program: our binary Linux-Matlab16b program EstPdbAli (Estimate Pdb from Alignment) with an example of used.- Results: summary and detailed description of the results.- ForwBackPart: Matlab example that shows the computation of the...

calc_covariances.py

Nathan Hagen & Yukitoshi Otani
Code File

Companion file for "Studying associative learning without solving learning equations"

Stefano Ghirlanda
This is a companion file to the paper: Studying associative learning without solving learning equations, under revision at Journal of Mathematical Psychology as of May
2018. This file reproduces the calculations in the paper using
the sympy symbolic computation package in python.

Companion file for "Studying associative learning without solving learning equations"

Stefano Ghirlanda
This is a companion file to the paper: Studying associative learning without solving learning equations, under revision at Journal of Mathematical Psychology as of May
2018. This file reproduces the calculations in the paper using
the sympy symbolic computation package in python.

Open OnDemand v1.3 source code

OH-TECH Consortium
This is a snapshot of the Open OnDemand source code version 1.3 A full repository is available at https://github.com/OSC/Open-OnDemand

Open OnDemand v1.3 source code

OH-TECH Consortium
This is a snapshot of the Open OnDemand source code version 1.3 A full repository is available at https://github.com/OSC/Open-OnDemand

Modeling code accompanying the ENeuro paper entitled "Neurodynamic Evidence Supports a Forced-Excursion Model of Decision-Making under Speed/Accuracy Instructions"

Laure Spieser, Carmen Kohl, Sven Bestmann, Tina Forster & Kielan Yarrow
Matlab code (developed using 2015-2017 versions) used to fit quantile RT data with several versions of a race (two accumulator) sequential-sampling model, and produce predictions for EEG and TMS MEP signals. This process is fully described in the ENeuro paper entitled "Neurodynamic Evidence Supports a Forced-Excursion Model of Decision-Making under Speed/Accuracy Instructions." Code is being archived for the purpose of improving methodological transparency. It has not been commented or optimized with a view to use...

Modeling code accompanying the ENeuro paper entitled "Neurodynamic Evidence Supports a Forced-Excursion Model of Decision-Making under Speed/Accuracy Instructions"

Laure Spieser, Carmen Kohl, Sven Bestmann, Tina Forster & Kielan Yarrow
Matlab code (developed using 2015-2017 versions) used to fit quantile RT data with several versions of a race (two accumulator) sequential-sampling model, and produce predictions for EEG and TMS MEP signals. This process is fully described in the ENeuro paper entitled "Neurodynamic Evidence Supports a Forced-Excursion Model of Decision-Making under Speed/Accuracy Instructions." Code is being archived for the purpose of improving methodological transparency. It has not been commented or optimized with a view to use...

R script

Eric Laflamme
R script performs mixed effects Poisson regression for species richness. Also, performs repeated measures ANOVA with multiple comparison post-hoc analysis.

R script

Eric Laflamme
R script performs mixed effects Poisson regression for species richness. Also, performs repeated measures ANOVA with multiple comparison post-hoc analysis.

file_consolidation_shell

Ashton Eaves
Unix script that allows one to consolidate many identical spreadsheets into one large spreadsheet for data analysis.

file_consolidation_shell

Ashton Eaves
Unix script that allows one to consolidate many identical spreadsheets into one large spreadsheet for data analysis.

SLR.mdl

Ashton Eaves
Vensim model of sea level rise

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