357 Works

Probabilistic cytoarchitectonic map of Area OP9 (Frontal Operculum)

M. Saal, S. Bludau, H. Mohlberg, S. Caspers & K. Amunts
This dataset contains the distinct probabilistic cytoarchitectonic map of Area OP9 (Frontal Operculum) in the individual, single subject template of the MNI Colin 27 reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the cytoarchitectonic analysis were then mapped to...

Probabilistic cytoarchitectonic map of Area hOc4la (LOC) (v3.4)

A. Malikovic, K. Amunts, A. Schleicher, H. Mohlberg, M. Kujovic, N. Palomero-Gallagher, S. B. Eickhoff & K. Zilles
This dataset contains the distinct architectonic Area hOc4la (LOC) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the...

Probabilistic cytoarchitectonic map of CA (Hippocampus) (v11.1)

K. Amunts, O. Kedo, M. Kindler, P. Pieperhoff, H. Mohlberg, N. Shah, U. Habel, F. Schneider & K. Zilles
This dataset contains the distinct architectonic CA (Hippocampus) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the cytoarchitectonic...

Individual Brain Charting: HCP Emotion

A. Pinho, A. Amadon, T. Ruest, M. Fabre, E. Dohmatob, I. Denghien, C. Ginisty, S. Becuwe-Desmidt, S. Roger, L. Laurier, V. Joly-Testault, G. Médiouni-Cloarec, C. Doublé, B. Martins, P. Pinel, E. Eger, G. Varoquaux, C. Pallier, S. Dehaene, L. Hertz-Pannier & B. Thirion
This dataset contains functional magnetic resonance images (fMRIs) of 12 subjects performing HCP Emotional task aiming to capture neural activity related to the perception of fear and anger. Affective facial expressions were used as visual stimuli due to their importance in adaptive social behavior. The paradigm included two categories of blocks, namely face and shape blocks. All blocks consisted of a series of events, in which images of faces or shapes were displayed, respectively. There...

Probabilistic map of the left uncinate fasciculus (atlas of deep white matter fibre bundles, version 2018)

P. Guevara, D. Duclap, C. Poupon, L. Marrakchi-Kacem, P. Fillard, D. Le Bihan, M. Leboyer, J. Houenou & J.-F. Mangin
This data contains the probability map of the left uncinate fasciculus (atlas of deep white matter fibre bundles, version 2018), in the MNI ICBM152 reference brain. This bundle was identified by fibre clustering, from the tractography datasets of 77 subjects in Neurospin’s ARCHI database. The map shows the probability of finding a fibre belonging to the bundle in each voxel of the reference brain. The maximum probability corresponds to the voxels with the highest number...

Neuropsin tetracycline-transactivator expression: coronal sections (case 2849)

M. Yetman, S. Lillehaug, J.G. Bjaalie, T.B. Leergaard & J. Jankowsky
Bright-field microscopy images of serial coronal brain sections showing neuropsin (Nop) promoter expression in a bigenic Nop-tetracycline-transactivator (tTA) mouse brain, (case 2849 adult female), using a driver-reporter construct in which the Nop-tTA promoter regulates the expression of the E. coli derived LacZ reporter gene encoding β-galactosidase, which is visualized histologically using X-gal (5-Bromo-4-chloro-3-indolyl β-d-galactopyranoside) as a substrate. Methodological details are provided in Yetman et al., Brain Struct Funct 221:2231-49, 2016. Our data show that the...

Probabilistic cytoarchitectonic map of Area TE 1.0 (HESCHL)

P. Morosan, J. Rademacher, A. Schleicher, K. Amunts, T. Schormann, C. Werner, H. Freund & K. Zilles
This dataset contains the distinct probabilistic cytoarchitectonic map of Area TE 1.0 (HESCHL) in the individual, single subject template of the MNI Colin 27 reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the cytoarchitectonic analysis were then mapped to...

Probabilistic cytoarchitectonic map of Area PFcm (IPL) (v9.4)

S. Caspers, S. Geyer, S. B. Eickhoff, A. Schleicher, H. Mohlberg, F. Scheperjans, K. Zilles & K. Amunts
This dataset contains the distinct architectonic Area PFcm (IPL) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the...

Probabilistic cytoarchitectonic map of Area Ig1 (Insula)

F. Kurth, S. B. Eickhoff, A. Schleicher, L. Hoemke, K. Zilles & K. Amunts
This dataset contains the distinct probabilistic cytoarchitectonic map of Area Ig1 (Insula) in the individual, single subject template of the MNI Colin 27 reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the cytoarchitectonic analysis were then mapped to both...

3D imaging of the vascular system of the mouse brain.

E. Erlebach, B. Weber & V. Efremov
The goal of the study is to produce the first high resolution, 3D reconstruction of the entire macrostructure and vascular system of the mouse brain. To that end previously synchrotron radiation-based X-ray microscopy images were collected. Recently two-photon microscopy images were collected to that end. And we are looking for additional alternative imaging sources. Then this data is translated into 3D mesh and volumetric models (graph). This dataset contains tiff image array of part of...

Synapse maps - confocal

A. Merchan-Perez, R. Benevides, S. Gonzalez, S. Tapia, A. Kastanauskaite, A. Muñoz, A. Santuy, J. DeFelipe, R. Rodriguez, C. Alvarez & L. Valdes
We have processed brain material from transgenic mice expressing the enhanced green fluorescent protein (EGFP) coupled with the synaptic protein PSD95 (EGFP95) in order to accomplish the automated counting process using 3D connected components of fluorescent puncta in stacks of confocal microscope images for the CA1 region of the hippocampal formation. Furthermore, we have developed a PSDs volume segmentation and quantification algorithm designed to be executed in a supercomputer in order to obtain results in...

Interpolated 3D map of Area hPO1 (POS) in the Big Brain

M. Richter, K. Amunts, H. Mohlberg, S. Bludau, S. B. Eickhoff, K. Zilles & S. Caspers
This dataset contains cytoarchitectonic maps of Area hPO1 (POS) in the Big Brain dataset [Amunts et al. 2013]. The mappings were created using the semi-automatic method presented in Schleicher et al. 1999, based on coronal histological sections on 1 micron resolution. Mappings are available on approximately every 15-60th section of this region. They were then aligned to the corresponding sections of the 3D reconstructed Big Brain space, using the transformations used in Amunts et al....

3D high resolution SRXTM image data of cortical vasculature of rat brain.

B. Weber & M. Schneider
The goal of the study is to produce the first high resolution, 3D reconstruction of the entire macrostructure and vascular system of the rat/mouse brain. To that end synchrotron radiation-based X-ray microscopy images were collected. Then the data is translated into 3D mesh and volumetric models (graph). This dataset contains high resolution tiff image array of part of cortical vasculature of the rat brain. This dataset is used as an input to computational methods that...

Probabilistic cytoarchitectonic map of Area 3a (PostCG) (v8.4)

S. Geyer, A. Schleicher, T. Schormann, H. Mohlberg & K. Zilles
This dataset contains the distinct architectonic Area 3a (PostCG) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the...

Probabilistic cytoarchitectonic map of Area hOc4lp (LOC)

A. Malikovic, K. Amunts, A. Schleicher, H. Mohlberg, M. Kujovic, N. Palomero-Gallagher, S. B. Eickhoff & K. Zilles
This dataset contains the distinct probabilistic cytoarchitectonic map of Area hOc4lp (LOC) in the individual, single subject template of the MNI Colin 27 reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the cytoarchitectonic analysis were then mapped to both...

Probabilistic cytoarchitectonic map of Area hIP5 (IPS) (v7.1)

M. Richter, K. Amunts, H. Mohlberg, S. Bludau, S. B. Eickhoff, K. Zilles & S. Caspers
This dataset contains the distinct architectonic Area hIP5 (IPS) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the...

Probabilistic map of the right short cingulate fibres (atlas of deep white matter fibre bundles, version 2018)

P. Guevara, D. Duclap, C. Poupon, L. Marrakchi-Kacem, P. Fillard, D. Le Bihan, M. Leboyer, J. Houenou & J.-F. Mangin
This data contains the probability map of the right short cingulate fibres (atlas of deep white matter fibre bundles, version 2018), in the MNI ICBM152 reference brain. This bundle was identified by fibre clustering, from the tractography datasets of 77 subjects in Neurospin’s ARCHI database. The map shows the probability of finding a fibre belonging to the bundle in each voxel of the reference brain. The maximum probability corresponds to the voxels with the highest...

Probabilistic cytoarchitectonic map of Area Id2 (Insula) (v7.1)

J. Quabs, S. Caspers, S. Bludau, K. Kossakowski, H. Mohlberg & K. Amunts
This dataset contains the distinct probabilistic cytoarchitectonic map of Area Id2 (Insula) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The...

Whole-brain parcellation of the JuBrain Cytoarchitectonic Atlas (v18)

K. Amunts, S. B. Eickhoff, S. Caspers, S. Bludau & H. Mohlberg
This dataset contains the whole-brain parcellation of the JuBrain Cytoarchitectonic Atlas (Amunts and Zilles, 2015) in the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. The parcellation is derived from the individual probability maps (PMs) of the cytoarchitectonic regions released in the JuBrain Atlas, that are further combined into a Maximum Probability Map (MPM). The MPM is calculated by considering for each voxel the probability of all cytoarchitectonic...

Probabilistic cytoarchitectonic map of Area TE 1.1 (HESCHL)

P. Morosan, J. Rademacher, A. Schleicher, K. Amunts, T. Schormann, C. Werner, H. Freund & K. Zilles
This dataset contains the distinct probabilistic cytoarchitectonic map of Area TE 1.1 (HESCHL) in the individual, single subject template of the MNI Colin 27 reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the cytoarchitectonic analysis were then mapped to...

Density measurements of different receptors for Area 3b

K. Zilles, M. Bacha-Trams, N. Palomero-Gallagher, K. Amunts & A. Friederici
This dataset contains the densities (in fmol/mg protein) of 16 receptors for classical neurotransmitters in Area 3b using quantitative in vitro autoradiography. The receptor density measurements can be provided in three ways: (fp) as density fingerprints (average across samples; mean density and standard deviation for each of the 16 receptors), (pr) as laminar density profiles (exemplary data from one sample; average course of the density from the pial surface to the border between layer VI...

Probabilistic cytoarchitectonic map of Area OP3 (POperc) (v9.4)

S. B. Eickhoff, A. Schleicher, K. Amunts, H. Mohlberg & K. Zilles
This dataset contains the distinct architectonic Area OP3 (POperc) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the...

Probabilistic cytoarchitectonic map of Area Id6 (Insula) (v3.1)

J. Quabs, S. Caspers, S. Bludau, H. Mohlberg & K. Amunts
This dataset contains the distinct architectonic Area Id6 (Insula) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the...

Probabilistic cytoarchitectonic map of Area hIP7 (IPS) (v7.1)

M. Richter, K. Amunts, H. Mohlberg, S. Bludau, S. B. Eickhoff, K. Zilles & S. Caspers
This dataset contains the distinct architectonic Area hIP7 (IPS) in the individual, single subject template of the MNI Colin 27 as well as the MNI ICBM 152 2009c nonlinear asymmetric reference space. As part of the JuBrain cytoarchitectonic atlas, the area was identified using classical histological criteria and quantitative cytoarchitectonic analysis on cell-body-stained histological sections of 10 human postmortem brains obtained from the body donor program of the University of Düsseldorf. The results of the...

3D reconstructions of pyramidal cells in mouse hippocampal CA1 region

J. DeFelipe, R. Benavides-Piccione, I. Fernaud, A. Kastanauskaite, M. Regalado, S. Gonzalez-Tapia, G. Leon, D. Cano & C. Rojo
We have produced 3D reconstructions of pyramidal cells in the mouse hippocampal CA1 region using Neurolucida software from 3D confocal stack of images. Data from 3D reconstructions will be useful to modeling and integration of anatomical data with functional studies in mouse hippocampus. **Embargo status:** *This dataset is temporarily under embargo. The data will become available for download after the embargo period.*

Registration Year

  • 2018
    165
  • 2019
    192

Resource Types

  • Dataset
    357

Data Centers

  • Human Brain Project - Neuroinformatics Platform
    357