319 Works

Orussus abietinus genome assembly v1.0

Jan Philip Oeyen, Kim C. Worley, Shwetha C. Murali, Sandra L. Lee, Donna M. Muzny, Hsu Chao, Huyen Dinh, Harshavardhan Doddapaneni, Jiaxin Qu, Shannon Dugan, Yi Han, Richard A. Gibbs, Stephen Richards, Bernhard Misof & Oliver Niehuis

Data from: Host specificity of Aphelinus species collected from soybean aphid in Asia

Keith R. Hopper, Kathryn Lanier, Joshua H. Rhoades, William G. Meikle, George E. Heimpel, Robert J. O'Neil, David G. Voegtlin & James B. Woolley

Development of Life Cycle Inventory Data for U.S. Swine Production Scenarios

Heather Sandefur, Jasmina Burek, Marty Matlock, Greg Thoma & Eric Boles
The swine production datasets are the product of ongoing work by the University of Arkansas Center for Agricultural and Rural Sustainability, the United States Department of Agriculture, and the National Pork Board. The data documentation in this metadata record describes the project background and nomenclature, in addition to a description of the dataset structure, individual unit processes, and production scenarios. Flow-level metadata descriptions for selected unit processes within the U.S. swine dataset can be found...

Data from: A hydrological modeling dataset for the Johnston Draw catchment, Reynolds Creek Experimental Watershed, Idaho, USA

C.L. Enslin, Sarah E. Godsey, Daniel G. Marks, Patrick R. Kormos, Mark S. Seyfried, James P. McNamara & Timothy E. Link

Data from: Enabling proteomic studies with RNA-Seq: the proteome of tomato pollen as a test case

Gloria Lopez-Casado, Paul A. Covey, Patricia A. Bedinger, Lukas A. Mueller, Theodore W. Thannhauser, Sheng Zhang, Zhangjun Fei, James J. Giovannoni & Jocelyn K. C. Rose
This data set here is the supporting material to the article, "Enabling proteomic studies with RNA-Seq: The proteome of tomato pollen as a test case." 2012. Researchers conducted a quantitative analysis of the proteomes of pollen from domesticated tomato (Solanum lycopersicum) and two wild relatives that exhibit differences in mating systems and in interspecific reproductive barriers. Using a custom tomato RNA-Seq database created through 454 pyrosequencing, more than 1200 proteins were identified, with subsets showing...

Germplasm Resources Information Network (GRIN)

U. S. Department Of Agriculture USDA Agricultural Research Service

Annotated reference transcriptome for female Culicoides sonorensis biting midges

Dana Nayduch & Christopher A. Saski
Unigene sequences were annotated by BlastX alignment to the non-redundant protein database (NCBI/GenBank) and the Aedes aegypti and Culex quinquefasciatus gene annotations (Vectorbase). This was done with a 1e-05 expectation value. Top hits are shown including accession numbers and description, if available. Unigene number and corresponding GenBank accession numbers are provided for all C. sonorensis genes. Both tables are modified from supplementary information tables at doi:10.1371/journal.pone.0098123.s003 and numbered accordingly.

Feedstock Readiness Level (FSRL) evaluation: Sorghum bicolor (sweet sorghum), Alcohol-to-Jet, Central East, Mar. 2017

Robert Mitchell
Feedstock readiness level evaluations are performed for a specific feedstock-conversion process combination and for a particular region. FSRL evaluations complement evaluations of Fuel Readiness Level (FRL) and environmental progress. The data from this evaluation, compiled in March 2017, assesses the maturity of Sorghum bicolor (sweet sorghum) as a feedstock for the Alcohol-to-Jet conversion process in the United States Central East region.

Oncopeltus fasciatus Official Gene set v1.1

Iris M. Vargas Jentzsch, Daniel S. T. Hughes, Monica Poelchau, Hugh M. Robertson, Joshua B. Benoit, Andrew J. Rosendale, David Armisén, Elizabeth J. Duncan, Barbara M. I. Vreede, Chris G. C. Jacobs, Chloe Berger, Denielle L. Burnett, Chun-Che Chang, Yen-Ta Chen, Ariel D. Chipman, Andrew Cridge, Antonin Jean Johan Crumière, Peter Dearden, Deniz F. Erezyilmaz, Cassandra Extavour, Markus Friedrich, Thorsten Horn, Yi-Min Hsiao, Jeffery W. Jones, Tamsin E. Jones … & Kristen A. Panfilio
The Oncopeltus fasciatus genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The O. fasciatus research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.1. Oncopeltus fasciatus has been an established lab organism for over 60 years, and has been used for a wide range of studies from physiology to development and evolution. As a relatively conservative...

Leptinotarsa decemlineata Official Gene set v1.2

Sean Schoville, Yolanda Chen, Monica Poelchau, Daniel Hughes, Hugh Robertson, Joshua Benoit, Andrew Rosendale, Jeffery Jones, Subba R. Palli, Abhishek Kumar, Victor-Manuel Ruiz-Arroyo, Anna Childers, Julia Bowsher, Kaat Cappelle, Justin Clements, Patamarerk Engsontia, Inmaculada García-Robles, Alessandro Grapputo, Emily Jennings, Iris Vargas Jentzsch, Megha Kalsi, Fei Li, Marcé D. Lorenzen, Xingzhou Ma, Alexander Martynov … & Stephen Richards

Leptinotarsa decemlineata genome assembly 1.0

Sean Schoville, Yolanda Chen, Martin Andersson, Joshua Benoit, Anita Bhandari, Julia Bowsher, Kristian Brevik, Kaat Cappelle, Mei-Ju Chen, Anna Childers, Christopher Childers, Olivier Christiaens, Justin Clements, Elena Elpidina, Patamarerk Engsontia, Markus Friedrich, Inmaculada García-Robles, Chandan Goswami, Alessandro Grapputo, Kristina Gruden, Marcin Grynberg, Bernard Henrissat, Emily Jennings, Jeffery Jones, Megha Kalsi … & Stephen Richards
The Baylor College of Medicine recently sequenced and annotated the Leptinotarsa decemlineata genome as part of the i5k pilot project. This dataset presents the Leptinotarsa decemlineata genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the [National Center for Biotechnology Information's GenBank resource](http://www.ncbi.nlm.nih.gov/assembly/GCA_000696205.1). Assembly method details will be available in a forthcoming publication. The Colorado potato beetle is considered the economically most significant defoliator of potato in northern...

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  • US Department of Agriculture, Agricultural Data Commons