480 Works

AMIGOS - Hypoxia

Furkan Kurtoglu, John Metzcar, Paul Macklin & Randy Heiland
Modeling Tumor in Hypoxic Condition

Multi-species Biofilm on Wound Surface

Furkan Kurtoglu & Aneequa Sundus
This is a class project that aims modeling two-species biofilm that grows on a wound

Zooley's Notebook

Shawn Rice
An example Jupyter Notebook

Nanoparticle Assembly Lab

JCS Kadupitiya, Nicholas Brunk, Masaki Uchida, & Vikram Jadhao
Simulate assembly of nanoparticles into aggregates in physiological conditions

Ions in Nanoconfinement

JCS Kadupitiya, Nasim Anousheh, Suresh Marru, & Vikram Jadhao
The Ions in Nanoconfinement app empowers users to simulate ions confined between material surfaces that are nanometers apart, and extract the associated ionic structure.

PhysiCell for tumor heterogeneity

Randy Heiland & Paul Macklin
2D simulation of tumor heterogeneity

PhysiCell cancer-immune model

Paul Macklin & Randy Heiland
PhysiCell model of immune cells attacking a heterogeneous tumor

LAMMPS driver tool for potential calibration

Saaketh Desai & Alejandro Strachan
Calculates basic properties of interest with a given interatomic potential and is used to drive the calibration of the potential.

PhysiCell: biased random migration demonstrator

Paul Macklin & Randy Heiland
PhysiCell demonstration of biased random cell migration

Jupyter Examples

Martin Hunt
Users Manual and Examples for Jupyter

Calibration using DAKOTA

Saaketh Desai & Alejandro Strachan
Uses DAKOTA to perform deterministic and Bayesian calibration

Motility Training App

Furkan Kurtoglu, Aneequa Sundus, Kali Konstantinopoulos & Mary Chen
Training application for "Motility" concept in PhysiCell.

Motility Training App for PhysiCell

Furkan Kurtoglu, Aneequa Sundus, Kali Konstantinopoulos, Drew Willis, Mary Chen, Randy Heiland & Paul Macklin
Training application for "Motility" concept in PhysiCell.

PhysiCell cancer biorobots simulation

Randy Heiland & Paul Macklin
2D simulation of biorobots delivering a drug to cancer cells

Hierarchical material optimization

Miguel Cuaycong
Assembles all possible configurations of a structural level in a Hierarchical Material.

Process Lab: Concentration-Dependent Diffusion

Shuqing Cao, Yang Liu & Peter Griffin
This modules simulates both the standard diffusion and concentration-dependent diffusion.

PhysiCell biorobots simulation

Randy Heiland
2D sim of director, worker, and cargo cells.

PhysiCell biorobots simulation

Randy Heiland & Paul Macklin
2D sim of director, worker, and cargo cells.

PhysiCell biorobots simulation

Randy Heiland & Paul Macklin
2D sim of director, worker, and cargo cells.

PhysiCell cancer biorobots simulation

Randy Heiland & Paul Macklin
2D simulation of biorobots delivering a drug to cancer cells

PhysiCell cancer-immune model

Paul Macklin & Randy Heiland
PhysiCell model of immune cells attacking a heterogeneous tumor

PhysiCell cancer-immune model

Paul Macklin & Randy Heiland
PhysiCell model of immune cells attacking a heterogeneous tumor

PhysiCell biorobots simulation

Randy Heiland & Paul Macklin
2D sim of director, worker, and cargo cells.

Physicell: liver tissue mechanobiology

Yafei Wang, Randy Heiland & Paul Macklin
An ABM simulating the liver tissue mechanobiology on cancer metastatic seeding with PhysiCell

Crystal Viewer Tool

Yuanchen Chu, Daniel Mejia, Fan Chen, James Fonseca, Michael Povolotskyi & Gerhard Klimeck
Visualize different crystal lattices and planes

Registration Year

  • 2019
    480

Resource Types

  • Collection
    203
  • Software
    158
  • Dataset
    119

Affiliations

  • University of Alberta
    1
  • Polytechnic University of Milan
    1
  • Purdue University West Lafayette
    1
  • National Technical University of Athens
    1
  • Public Works Research Institute
    1
  • California Department of Transportation
    1
  • State University of New York Polytechnic Institute
    1
  • Swiss Federal Institute of Technology in Zurich
    1
  • University of California, Davis
    1