158 Works

PhysiCell biorobots simulation

Randy Heiland & Paul Macklin
2D sim of director, worker, and cargo cells.

PhysiCell biorobots simulation

Randy Heiland & Paul Macklin
2D sim of director, worker, and cargo cells.

PhysiCell cancer-immune model

Paul Macklin & Randy Heiland
PhysiCell model of immune cells attacking a heterogeneous tumor

PhysiCell cancer biorobots simulation

Randy Heiland & Paul Macklin
2D simulation of biorobots delivering a drug to cancer cells

Process Lab: Concentration-Dependent Diffusion

Shuqing Cao, Yang Liu & Peter Griffin
This modules simulates both the standard diffusion and concentration-dependent diffusion.

PhysiCell cancer-immune model

Paul Macklin & Randy Heiland
PhysiCell model of immune cells attacking a heterogeneous tumor

PhysiCell biorobots simulation

Randy Heiland & Paul Macklin
2D sim of director, worker, and cargo cells.

PhysiCell biorobots simulation

Randy Heiland
2D sim of director, worker, and cargo cells.

Hierarchical material optimization

Miguel Cuaycong
Assembles all possible configurations of a structural level in a Hierarchical Material.

PhysiCell cancer biorobots simulation

Randy Heiland & Paul Macklin
2D simulation of biorobots delivering a drug to cancer cells

Nanoparticle Assembly Lab

JCS Kadupitiya, Nicholas Brunk, Masaki Uchida, & Vikram Jadhao
Simulate assembly of nanoparticles into aggregates in physiological conditions

Ions in Nanoconfinement

JCS Kadupitiya, Nasim Anousheh, Suresh Marru, & Vikram Jadhao
The Ions in Nanoconfinement app empowers users to simulate ions confined between material surfaces that are nanometers apart, and extract the associated ionic structure.

Calibration using DAKOTA

Saaketh Desai & Alejandro Strachan
Uses DAKOTA to perform deterministic and Bayesian calibration

Jupyter Examples

Martin Hunt
Users Manual and Examples for Jupyter

PhysiCell for tumor heterogeneity

Randy Heiland & Paul Macklin
2D simulation of tumor heterogeneity

Crystal Viewer Lab

Daniel Mejia, Gerhard Klimeck & Yuanchen Chu
Crystal Viewer Lab

Crystal Viewer Tool

Yuanchen Chu, Daniel Mejia, Fan Chen, James Fonseca, Michael Povolotskyi & Gerhard Klimeck
Visualize different crystal lattices and planes

Physicell: liver tissue mechanobiology

Yafei Wang, Randy Heiland & Paul Macklin
An ABM simulating the liver tissue mechanobiology on cancer metastatic seeding with PhysiCell

PhysiCell: infected system and off-site immune system

Parichit Sharma & Yafei Wang
Studying the interaction between an ODE driven offsite system and a system under invasion through Agent Based Modelling in PhysiCell.

PhysiCell cancer-immune model

Paul Macklin & Randy Heiland
PhysiCell model of immune cells attacking a heterogeneous tumor

LAMMPS driver tool for potential calibration

Saaketh Desai & Alejandro Strachan
Calculates basic properties of interest with a given interatomic potential and is used to drive the calibration of the potential.

Multi-species Biofilm on Wound Surface

Furkan Kurtoglu & Aneequa Sundus
This is a class project that aims modeling two-species biofilm that grows on a wound

Nanosphere Electrostatics Lab

JCS Kadupitiya, Nicholas Brunk, Sohile Ali, & Vikram Jadhao
The Nanosphere Electrostatics Lab empowers users to simulate the self-assembly of ions near a spherically shaped nanoparticle, and extract the effective electrostatic properties.

Peking University Resistive-Switching Random Access Memory (RRAM) Verilog-A Model

Weijie Xu & Jinfeng Kang
The Peking University RRAM Model is a SPICE-compatible compact model which is designed for simulation of metal-oxide based RRAM devices. It captures typical DC and AC electrical behaviors of the RRAM devices with physics-based model descriptions.

FunUQ for MD

Sam Reeve & Alejandro Strachan
Functional uncertainty quantification for molecular dynamics

Registration Year

  • 2019
    158

Resource Types

  • Software
    158