169 Works
pc4nanobio: cancer nanotherapy simulator
Randy Heiland, Yafei Wang & Paul Macklin
Simulate cancer response to drug-loaded nanoparticles
Protein Contact Maps
Benjamin Rafferty, Zachary Flohr & Ashlie Martini
Create and view protein contact maps and distance maps.
PhysiBoSS simulation of COVID19 infection
Vincent Noel
PhysiBoSS simulation of COVID19 infection based on Paul Macklin's PhysiCell simulation
Purdue ME 581-Numerical Methods in Engineering Using Jupyter Notebooks
Martin Hunt, Marisol Koslowski, Peter Kolis, Meredith Meyer, Akshay Dandekar & Camilo Duarte-Cordon
Jupyter notebooks with an introduction to python and examples for Numerical Methods in Engineering.
PhysiCell model for COVID19
Randy Heiland & Paul Macklin
Prototype 2-D multicellular simulation of COVID19.
Bound States Calculation Lab
Pranay Baikadi, Michael Povolotskyi, Viswanathan Nolastname, Dragica Vasileska, Xufeng Wang & Gerhard Klimeck
Calculates bound states for square, parabolic, triangular and V-shaped potential energy profile
MOOSE Simulation Environment
Steven Clark, Larry Aagesen & Daniel Schwen
Idaho National Laboratory's MOOSE (Multiphysics Object Oriented Simulation Environment)
Purdue ME 581-Numerical Methods in Engineering Using Jupyter Notebooks
Martin Hunt, Marisol Koslowski, Peter Kolis, Meredith Meyer, Akshay Dandekar & Camilo Duarte-Cordon
Jupyter notebooks with an introduction to python and examples for Numerical Methods in Engineering.
Purdue ME 581-Numerical Methods in Engineering Using Jupyter Notebooks
Martin Hunt, Marisol Koslowski, Peter Kolis, Meredith Meyer, Akshay Dandekar & Camilo Duarte-Cordon
Jupyter notebooks with an introduction to python and examples for Numerical Methods in Engineering.
Cycle Training App for PhysiCell
Furkan Kurtoglu & Aneequa Sundus
Training application for "Cycle" concept in PhysiCell.
Feature Selection for Machine Learning
Zachary McClure & Alejandro Strachan
Assessing feature selection for machine learning models
Machine-learning Assisted Virtual Exfoliation via Liquid Phase
Alireza Moradzadeh, Narayan Aluru & Darren Adams
Finds the optimal solvent for exfoliation via liquid phase combining machine learning algorithms and molecular dynamics simulations
Polymer Crystal Structure Generator and Analysis Software - PolymerXtal
Tongtong Shen, Jessica Nash & Alejandro Strachan
PolymerXtal is a software designed to build and analyze molecular-level polymer crystal structures.
VEDA: Virtual Environment for Dynamic AFM
Daniel Kiracofe, John Melcher, Arvind Raman, Sudharsan Balasubramaniam, Steven Johnson & Shuiqing Hu
A suite of dynamic AFM simulators for air/liquid/vacuum on soft or hard samples.
Purdue ME 581-Numerical Methods in Engineering Using Jupyter Notebooks
Martin Hunt, Marisol Koslowski, Peter Kolis, Meredith Meyer, Akshay Dandekar & Camilo Duarte-Cordon
Jupyter notebooks with an introduction to python and examples for Numerical Methods in Engineering.
Compact NEGF-Based Solver for Double-Gate MOSFETs
Fabian Hosenfeld & Alexander Kloes
Fast simulation of the DC current in a nanoscale double-gate MOSFET including thermionic emission and source-to-drain tunneling current.
Purdue ME 581-Numerical Methods in Engineering Using Jupyter Notebooks
Martin Hunt, Marisol Koslowski, Peter Kolis, Meredith Meyer, Akshay Dandekar & Camilo Duarte-Cordon
Jupyter notebooks with an introduction to python and examples for Numerical Methods in Engineering.
PNJunction Lab Exploration Tool
Daniel Mejia, Alejandro Strachan & Saaketh Desai
PNJunction Lab Exploration Tool
Microenvironment Concept Training App for PhysiCell
Aneequa Sundus
Training application for "Microenvironment" concept in PhysiCell.
Purdue ME 581-Numerical Methods in Engineering Using Jupyter Notebooks
Martin Hunt, Marisol Koslowski, Peter Kolis, Meredith Meyer, Akshay Dandekar & Camilo Duarte-Cordon
Jupyter notebooks with an introduction to python and examples for Numerical Methods in Engineering.
Feature Selection for Machine Learning
Zachary McClure & Alejandro Strachan
Assessing feature selection for machine learning models
IAV Kinetics Module
Module explaining the in-host viral kinetics of IAV under different conditions.
PhysiCell biorobots simulation
Randy Heiland & Paul Macklin
2D sim of director, worker, and cargo cells.
PhysiCell for tumor heterogeneity
Randy Heiland & Paul Macklin
2D simulation of tumor heterogeneity
Nanoparticle Assembly Lab
Nicholas Brunk, JCS Kadupitiya, Masaki Uchida, & Vikram Jadhao
Simulate assembly of nanoparticles into aggregates in physiological conditions.