169 Works

Polyvalent Nanoparticle Binding Simulator

, JCS Kadupitiya & Vikram Jadhao
Simulates the binding of ligand-decorated nanoparticles to cell membrane driven by ligand-cell-receptor attraction

XRD interactive trends plot

Enze Chen
Observe changes in powder XRD spectra by modifying experimental parameters.

PhysiBoSSa Simulation with ECM

Marco Ruscone
Agent based multicellular simulation with extracellular matrix interaction

Purdue ME 581-Numerical Methods in Engineering Using Jupyter Notebooks

Martin Hunt, Marisol Koslowski & Peter Kolis
Jupyter notebooks with an introduction to python and examples for Numerical Methods in Engineering.

PhysiBoSSa Simulation with ECM (alpha version)

Marco Ruscone
Agent based multicellular simulation with extra cellular matrix interaction

PhysiBoSSa Simulation with ECM

Marco Ruscone, Vincent Noel, Laurence Calzone, Gaelle Letort & Arnau Montagud
Agent based multicellular simulation with extracellular matrix interaction

A virion replication tissue simulator

Yafei Wang, Randy Heiland & Paul Macklin
Simulate virus replication dynamics with PhysiCell

Unsupervised learning using dimensionality reduction via matrix decomposition

Michael Sakano & Alejandro Strachan
Learn PCA and NMF via chemistry example

Unsupervised learning using dimensionality reduction via matrix decomposition

Michael Sakano & Alejandro Strachan
Construct 3-component chemistry model from ReaxFF bond table

Introduction to Machine Learning in MSE: Predicting Bulk Modulus

Abigail Gentry & Peilin Liao
In this module, you will learn how to predict bulk modulus using machine learning.

Physicell: liver tissue mechanobiology

Yafei Wang, Randy Heiland & Paul Macklin
An ABM simulating the liver tissue mechanobiology on cancer metastatic seeding with PhysiCell

MOOSE Simulation Environment

Steven Clark, Larry Aagesen & Daniel Schwen
Idaho National Laboratory's MOOSE (Multiphysics Object Oriented Simulation Environment)

Hands-on Deep Learning for Materials

Saaketh Desai & Edward Kim
This tool introduces users to deep learning techniques such as convolutional neural networks and variational auto encoders from a materials standpoint

Motility Training App for PhysiCell

Furkan Kurtoglu, Aneequa Sundus, Kali Konstantinopoulos, Drew Willis, Mary Chen, Randy Heiland & Paul Macklin
Training application for "Motility" concept in PhysiCell.

PhysiCell model for tumor hypoxia

Lima Heber & Paul Macklin
Multicellular simulation in 2-D of tumor hypoxia.

A virion pharmacodynamics response tissue simulator

Yafei Wang, Randy Heiland & Paul Macklin
Simulate virus pharmacodynamics response with PhysiCell

WHiTe Compact Models

Neal Wood
This package provides a set of 4H silicon carbide high-temperature integrated device compact models, written in industry standard Verilog-A; currently included are a resistor and a junction field-effect transistor.

PhysiBoSS simulation of COVID19 infection

Vincent Noel
PhysiBoSS simulation of COVID19 infection based on Paul Macklin's PhysiCell simulation

Molecular Foundry Photonics Toolkit

Alexander McLeod, P. Schuck & Jeffrey Neaton
Simulate realistic 1, 2, or 3-dimension nano-optical systems using the FDTD method.

PhysiCell model for tumor hypoxia

Lima Heber, Paul Macklin & Furkan Kurtoglu
Multicellular simulation in 2-D of tumor hypoxia.

Amide I Vibrational Spectroscopy Lab

Michael Reppert & Jacob Wat
This tool allows users to upload/fetch protein databank files, visualize the protein structure, and calculate Amide I vibrational spectra for the protein.

PhysiCell model for COVID19

Randy Heiland, Yafei Wang & Paul Macklin
Prototype 2-D multicellular simulation of COVID19.

Thermal Conductivity Simulator

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Simulate thermal conductivity of Silicon using reverse non-equilibrium molecular dynamics simulations.

Nanoparticle Assembly Lab

Nicholas Brunk, JCS Kadupitiya, Masaki Uchida, & Vikram Jadhao
Simulate assembly of nanoparticles into aggregates in physiological conditions.

Purdue ME 581-Numerical Methods in Engineering Using Jupyter Notebooks

Martin Hunt, Marisol Koslowski, Peter Kolis, Meredith Meyer, Akshay Dandekar & Camilo Duarte-Cordon
Jupyter notebooks with an introduction to python and examples for Numerical Methods in Engineering.

Registration Year

  • 2020
    169

Resource Types

  • Software
    169