171 Works

The Swedish Hip Arthroplasty Register Annual Report 2015

Johan Kärrholm, Hans Lindahl, Henrik Malchau, Maziar Mohaddes, Cecilia Rogmark & Ola Rolfson

Svenska Höftprotesregistret Årsrapport 2015

Johan Kärrholm, Hans Lindahl, Henrik Malchau, Maziar Mohaddes, Cecilia Rogmark & Ola Rolfson

Överjärna 53:1

Swedish National Heritage Board
Not available.

Oden Southern Ocean 2008/09 - Conductivity-Temperature-Depth (CTD) Data Collected Onboard Icebreaker Oden during November 2008 through January 2009.

Polarforskningsekretariatet
This data set contains conductivity, temperature and depth data collected during the American-Swedish expedition Oden Southern Ocean 2008/09, which was an international research cruise using the icebreaker Oden. The expedition embarked from Gothenborg, Sweden on October 28 2008 and arrived in McMurdo Januari 2009. Data include: water depth, pressure, water temperature, salinity, and dissolved oxygen. Further metadata on instrumentation and the individual variables can be found in the info file. Graphics and files describing the...

Oden Southern Ocean 2007/08 - Conductivity-Temperature-Depth (CTD) Data Collected Onboard Icebreaker Oden during November 2007 through January 2008.

Polarforskningsekretariatet
This data set contains conductivity, temperature and depth data collected during the American\-Swedish expedition Oden Southern Ocean 2007/08, which was an international research cruise using the icebreaker Oden\. The expedition embarked from Landskrona, Sweden on October 19 2007 and arrived in McMurdo Januari 8 2008\. Data include: water depth, pressure, water temperature, conductivity, salinity, chlorophyll (fluourescence) and dissolved oxygen\. Further metadata on instrumentation and the individual variables can be found in the info file\. Graphics...

Steige et al. 2017. Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

Benjamin Laenen
Collections of scripts and data used in Steige et al. 2017. 
It contains:    * Scripts for analysing genomic data and ASE     * Script to do regression on ASE genes    * Dataset of ASE and genomic predictors    * VCF files from intra-specif F1 of Capsella Grandiflora for DNA and RNA    * VCF files for Capsella grandiflora populations

Steige et al. 2017. Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

Benjamin Laenen
Collections of scripts and data used in Steige et al. 2017. 
It contains:    * Scripts for analysing genomic data and ASE     * Script to do regression on ASE genes    * Dataset of ASE and genomic predictors    * VCF files from intra-specif F1 of Capsella Grandiflora for DNA and RNA    * VCF files for Capsella grandiflora populations

Scripts for analysing genomic data and ASE in Capsellla grandiflora

Benjamin Laenen
An example script with all program versions and flags used for bioinformatic analyses in Steige et al. 2017 PNAS.

Scripts for analysing genomic data and ASE in Capsellla grandiflora

Benjamin Laenen
An example script with all program versions and flags used for bioinformatic analyses in Steige et al. 2017 PNAS.

Dataset of ASE and genomic predictors from Capsella grandiflora

Benjamin Laenen
The dataset includes all the information used to assess the importance of genomic predictors on allele specific expression in Capsella grandiflora. The description of the predictors can be found in the Steige et al 2017 PNAS .

Dataset of ASE and genomic predictors from Capsella grandiflora

Benjamin Laenen
The dataset includes all the information used to assess the importance of genomic predictors on allele specific expression in Capsella grandiflora. The description of the predictors can be found in the Steige et al 2017 PNAS .

VCF files from intra-specif F1 of Capsella Grandiflora for DNA and RNA

Benjamin Laenen
VCF file from intra-specif F1 of Capsella Grandiflora for DNA and RNA used in Steige et al. 2017 PNAS

VCF files from intra-specif F1 of Capsella Grandiflora for DNA and RNA

Benjamin Laenen
VCF file from intra-specif F1 of Capsella Grandiflora for DNA and RNA used in Steige et al. 2017 PNAS

VCF files for Capsella grandiflora populations

Benjamin Laenen
The folders contain two VCF files based on whole genome resequencing of Capsella grandiflora and produced with GATK. Each file correspond either to scattered samples throughout the species range or 21 individuals from population Cg89. Variants in the files have been filtered for quality, coverage and missing data (see manuscript for more info).
Those files have been used for population genomics analyses in Steige et al. 2017 PNAS.

VCF files for Capsella grandiflora populations

Benjamin Laenen
The folders contain two VCF files based on whole genome resequencing of Capsella grandiflora and produced with GATK. Each file correspond either to scattered samples throughout the species range or 21 individuals from population Cg89. Variants in the files have been filtered for quality, coverage and missing data (see manuscript for more info).
Those files have been used for population genomics analyses in Steige et al. 2017 PNAS.

Scripts for logistic regression of ASE genomic determinants.

Benjamin Laenen
Script used in Steige et al. 2017 PNAS for estimating the impact of genomic features on allele specific expression in Capsella grandiflora using logistic regression.
   * The folders contains an jupyter notebook (ypython) that runs the analysis by downloading the input from figshare   * A html reports of the analysis performed in the paper   * a r script from the jupyter notebook

Scripts for logistic regression of ASE genomic determinants.

Benjamin Laenen
Script used in Steige et al. 2017 PNAS for estimating the impact of genomic features on allele specific expression in Capsella grandiflora using logistic regression.
   * The folders contains an jupyter notebook (ypython) that runs the analysis by downloading the input from figshare   * A html reports of the analysis performed in the paper   * a r script from the jupyter notebook

Stockholm University & Figshare – Doing it ‘Right’ or Doing it at All?

Sofie Wennström, Karl Edqvist, Sabina Anderberg & Martin Wincent
This is the slides and the speaking manuscript of a presentation given at the event Figshare fest in London, UK on December 2nd 2016. The presentation is meant to show a case study of a university using the Figshare for institutions tool.
The presentation describes how the Stockholm University Library team is currently (Nov 2016) working with the Figshare for institutions platform to manage research data at Stockholm University. The presentation also includes an overview of...

Stockholm University & Figshare – Doing it ‘Right’ or Doing it at All?

Sofie Wennström, Karl Edqvist, Sabina Anderberg & Martin.Wincent@Sub.Su.Se
This is the slides and the speaking manuscript of a presentation given at the event Figshare fest in London, UK on December 2nd 2016. The presentation is meant to show a case study of a university using the Figshare for institutions tool.
The presentation describes how the Stockholm University Library team is currently (Nov 2016) working with the Figshare for institutions platform to manage research data at Stockholm University. The presentation also includes an overview of...

Stockholm University & Figshare – Doing it ‘Right’ or Doing it at All?

Sofie Wennström, Karl Edqvist, Sabina Anderberg & Martin.Wincent@Sub.Su.Se
This is the slides and the speaking manuscript of a presentation given at the event Figshare fest in London, UK on December 2nd 2016. The presentation is meant to show a case study of a university using the Figshare for institutions tool.
The presentation describes how the Stockholm University Library team is currently (Nov 2016) working with the Figshare for institutions platform to manage research data at Stockholm University. The presentation also includes an overview of...

MXCuBE 3 web application, on the way to next generation experiment control

Mikel Eguiraun, Antonio Milán Otero, Fredrik BOLMSTEN, Jie NAN, Marjolein THUNNISSEN, Darren Spruce, Vincent HARDION, Matias GUIJARRO, Marcus OSKARSSON, Antonia BETEVA, Daniele DE SANCTIS, Jens MEYER, Andy Gotz & Gordon Leonard
NOBUGS 2016 Proceedings

Graphical user interface and experiment control software at the MX beamlines at EMBL Hamburg

Ivars Karpics, Gleb Bourenkov, Thomas Schneider & Marina Nikolova
NOBUGS 2016 Proceedings

IROHA2: Standard instrument control software framework in MLF, J-PARC

Takeshi Nakatani, Yasuhiro Inamura, Kentaro Moriyama & Takayoshi Ito
NOBUGS 2016 Proceedings

Building a Prototype Data Analysis as a Service : the STFC experience

Frazer Barnsley, Brian Matthews, Tom Griffin, Jody Salt, Derek Ross, Alison Packer, Catalin Condurache & Alexander Dibbo
NOBUGS 2016 Proceedings

Scientific data lifecycle at Elettra-Sincrotrone Trieste

Roberto Borghes, Milan Prica & Georgios Kourousias
NOBUGS 2016 Proceedings

Resource Types

  • Collection
    95
  • Dataset
    40
  • Text
    26
  • Audiovisual
    2
  • Image
    2
  • Other
    1

Publication Year

  • 2016
    171

Registration Year

  • 2017
    5
  • 2016
    166

Data Centers

  • Stockholm University
    98
  • Swedish National Data Service
    35
  • European Spallation Source
    17
  • Environment Climate Data Sweden
    13
  • Centre of Registers Västra Götaland
    3
  • Quality of Government Institute
    3
  • DataGuru-LU, Department of Physical Geography and Ecosystem Science, Lund University
    2