165 Works

ICOS Ecosystem Instructions for Station Team Description

Dario Papale, Eleonora Canfora & Diego Polidori
This document describes the reporting of the ICOS Ecosystem station team and how the communication between ETC and different station team members will be organized. The aim is to have a clear definition of the people working at the station in order to optimize the exchange of information. The document is structured in six different sections with the aim to facilitate the use and application: - Station Team Roles, where it is described which are...

ICOS Ecosystem Instructions for Setting Up the Spatial Sampling Scheme

Dario Papale & Giacomo Nicolini
The ecosystem stations in ICOS have a number of sampling points and plots that are used to perform repeated measurements in time and to characterize the soil and vegetation of the monitored ecosystem. This document describes the selection and identification of the different sampling locations that are then used and recalled in the ICOS-Ecosystem Protocols and Instructions (e.g. soil sampling, ecosystem characterization, repeated ancillary vegetation measurements). It is structured in different sections with the aim...

ICOS Ecosystem Instructions for Station and Site Description

Dario Papale, Giacomo Nicolini & Eleonora Canfora
The “Station description and historical information” instruction document contains guidelines to acquire and report all the descriptive information required to characterize the station at the beginning of the ICOS period. Such information concerns mainly the station location and organization, the average climate conditions (temperature, precipitation, wind direction, radiation), and the history of disturbances and management. The document is structured in three different sections: - Measurements: in this section it is described how and where collect...

The Swedish Hip Arthroplasty Register Annual Report 2015

Johan Kärrholm, Hans Lindahl, Henrik Malchau, Maziar Mohaddes, Cecilia Rogmark & Ola Rolfson

Svenska Höftprotesregistret Årsrapport 2015

Johan Kärrholm, Hans Lindahl, Henrik Malchau, Maziar Mohaddes, Cecilia Rogmark & Ola Rolfson

Landsjö 2015 - Images

Martin Rundkvist & Umeå University
Archaeological investigations conducted during July 2015 in Landsjö, Kimstad Parish, Östergötland demonstrated that the steep outer bailey at Landsjö has never been a defensible structure, but was either never finished or never intended to offer anything more than an imposing facade to the west. The investigations also revealed rich artefact finds within the castle bailey's perimeter. Trenches were opened within two buildings abutting the western wall, and a sandy mount across the dry moat south...

The Class SOM survey 2008

SOM Institute University Of Gothenburg
The Class SOM questionnaire consisted of typical SOM questions about politics, society, media and leisure habits but also a large set of work-related questions. The study was carried out alongside National SOM 2008

Stensö Castle 2015 - Finds List

Martin Rundkvist & Umeå University
Investigations in 2015 in different parts of the archaeological site at Stensö Castle, Östra Husby parish, Östergötland, identified the western section of the castle's ringwall as well as a number of heaps of material which was extracted from the ruins for reuse. A rune carving was discovered on the outside of the southern tower, with the inscribed name 'Helge' - possibly a builder, worker, or the tower's architect. The excavations yielded rich finds of medieval...

Stensö Castle 2015 - Images

Martin Rundkvist & Umeå University
Investigations in 2015 in different parts of the archaeological site at Stensö Castle, Östra Husby parish, Östergötland, identified the western section of the castle's ringwall as well as a number of heaps of material which was extracted from the ruins for reuse. A rune carving was discovered on the outside of the southern tower, with the inscribed name 'Helge' - possibly a builder, worker, or the tower's architect. The excavations yielded rich finds of medieval...

Steige et al. 2017. Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

Benjamin Laenen
Collections of scripts and data used in Steige et al. 2017. 
It contains:    * Scripts for analysing genomic data and ASE     * Script to do regression on ASE genes    * Dataset of ASE and genomic predictors    * VCF files from intra-specif F1 of Capsella Grandiflora for DNA and RNA    * VCF files for Capsella grandiflora populations

Steige et al. 2017. Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

Benjamin Laenen
Collections of scripts and data used in Steige et al. 2017. 
It contains:    * Scripts for analysing genomic data and ASE     * Script to do regression on ASE genes    * Dataset of ASE and genomic predictors    * VCF files from intra-specif F1 of Capsella Grandiflora for DNA and RNA    * VCF files for Capsella grandiflora populations

Scripts for analysing genomic data and ASE in Capsellla grandiflora

Benjamin Laenen
An example script with all program versions and flags used for bioinformatic analyses in Steige et al. 2017 PNAS.

Scripts for analysing genomic data and ASE in Capsellla grandiflora

Benjamin Laenen
An example script with all program versions and flags used for bioinformatic analyses in Steige et al. 2017 PNAS.

Dataset of ASE and genomic predictors from Capsella grandiflora

Benjamin Laenen
The dataset includes all the information used to assess the importance of genomic predictors on allele specific expression in Capsella grandiflora. The description of the predictors can be found in the Steige et al 2017 PNAS .

Dataset of ASE and genomic predictors from Capsella grandiflora

Benjamin Laenen
The dataset includes all the information used to assess the importance of genomic predictors on allele specific expression in Capsella grandiflora. The description of the predictors can be found in the Steige et al 2017 PNAS .

VCF files from intra-specif F1 of Capsella Grandiflora for DNA and RNA

Benjamin Laenen
VCF file from intra-specif F1 of Capsella Grandiflora for DNA and RNA used in Steige et al. 2017 PNAS

VCF files from intra-specif F1 of Capsella Grandiflora for DNA and RNA

Benjamin Laenen
VCF file from intra-specif F1 of Capsella Grandiflora for DNA and RNA used in Steige et al. 2017 PNAS

VCF files for Capsella grandiflora populations

Benjamin Laenen
The folders contain two VCF files based on whole genome resequencing of Capsella grandiflora and produced with GATK. Each file correspond either to scattered samples throughout the species range or 21 individuals from population Cg89. Variants in the files have been filtered for quality, coverage and missing data (see manuscript for more info).
Those files have been used for population genomics analyses in Steige et al. 2017 PNAS.

VCF files for Capsella grandiflora populations

Benjamin Laenen
The folders contain two VCF files based on whole genome resequencing of Capsella grandiflora and produced with GATK. Each file correspond either to scattered samples throughout the species range or 21 individuals from population Cg89. Variants in the files have been filtered for quality, coverage and missing data (see manuscript for more info).
Those files have been used for population genomics analyses in Steige et al. 2017 PNAS.

Scripts for logistic regression of ASE genomic determinants.

Benjamin Laenen
Script used in Steige et al. 2017 PNAS for estimating the impact of genomic features on allele specific expression in Capsella grandiflora using logistic regression.
   * The folders contains an jupyter notebook (ypython) that runs the analysis by downloading the input from figshare   * A html reports of the analysis performed in the paper   * a r script from the jupyter notebook

Scripts for logistic regression of ASE genomic determinants.

Benjamin Laenen
Script used in Steige et al. 2017 PNAS for estimating the impact of genomic features on allele specific expression in Capsella grandiflora using logistic regression.
   * The folders contains an jupyter notebook (ypython) that runs the analysis by downloading the input from figshare   * A html reports of the analysis performed in the paper   * a r script from the jupyter notebook

Stockholm University & Figshare – Doing it ‘Right’ or Doing it at All?

Sofie Wennström, Karl Edqvist, Sabina Anderberg & Martin Wincent
This is the slides and the speaking manuscript of a presentation given at the event Figshare fest in London, UK on December 2nd 2016. The presentation is meant to show a case study of a university using the Figshare for institutions tool.
The presentation describes how the Stockholm University Library team is currently (Nov 2016) working with the Figshare for institutions platform to manage research data at Stockholm University. The presentation also includes an overview of...

Stockholm University & Figshare – Doing it ‘Right’ or Doing it at All?

Sofie Wennström, Karl Edqvist, Sabina Anderberg & Martin.Wincent@Sub.Su.Se
This is the slides and the speaking manuscript of a presentation given at the event Figshare fest in London, UK on December 2nd 2016. The presentation is meant to show a case study of a university using the Figshare for institutions tool.
The presentation describes how the Stockholm University Library team is currently (Nov 2016) working with the Figshare for institutions platform to manage research data at Stockholm University. The presentation also includes an overview of...

Stockholm University & Figshare – Doing it ‘Right’ or Doing it at All?

Sofie Wennström, Karl Edqvist, Sabina Anderberg & Martin.Wincent@Sub.Su.Se
This is the slides and the speaking manuscript of a presentation given at the event Figshare fest in London, UK on December 2nd 2016. The presentation is meant to show a case study of a university using the Figshare for institutions tool.
The presentation describes how the Stockholm University Library team is currently (Nov 2016) working with the Figshare for institutions platform to manage research data at Stockholm University. The presentation also includes an overview of...

MXCuBE 3 web application, on the way to next generation experiment control

Mikel Eguiraun, Antonio Milán Otero, Fredrik BOLMSTEN, Jie NAN, Marjolein THUNNISSEN, Darren Spruce, Vincent HARDION, Matias GUIJARRO, Marcus OSKARSSON, Antonia BETEVA, Daniele DE SANCTIS, Jens MEYER, Andy Gotz & Gordon Leonard
NOBUGS 2016 Proceedings

Resource Types

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    95
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    28
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    2
  • Image
    2
  • Other
    1

Publication Year

  • 2016
    165

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  • 2018
    3
  • 2017
    6
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    156

Data Centers

  • Stockholm University
    97
  • Swedish National Data Service
    40
  • European Spallation Source
    17
  • Centre of Registers Västra Götaland
    3
  • ICOS Carbon Portal
    3
  • Quality of Government Institute
    3
  • DataGuru-LU, Department of Physical Geography and Ecosystem Science, Lund University
    2