TIND

Switzerland

40 Works

Isoprene Oxidation Model

Kelvin Bates & Paul Wennberg
A nearly complete gas-phase oxidation mechanism of isoprene and its major products is developed, incorporating results from recent laboratory studies as well as insights from theoretical approaches. The mechanism is compiled with the aim of both providing accurate atmospheric simulations of the impact of isoprene emissions on HOx and NOx free radical concentrations and to produce realistic yields of products known to be involved in condensed phase processes. A reliable representation of the role of...

In Situ Carbon Dioxide and Methane Mole Fractions from the Los Angeles Megacity Carbon Project

Kristal Verhulst
The Los Angeles Megacity Carbon Project was designed to demonstrate a scientifically robust measurement of multi-year emission trends for carbon dioxide and methane in an urban environment (i.e. megacity) and attribute these trends to emissions from various sectors. Determination of greenhouse gas fluxes and uncertainties in urban areas is critical for evaluating mitigation strategies. The current LA surface observation network includes twelve in situ analyzers situated on tower- or rooftop/building- based platforms for continuous measurements...

Technical Design Report: Photon Arrival Time Monitor (PAM) at the European XFEL

Jia Liu, Florian Dietrich & Jan Grünert
The photon arrival time monitor (PAM), based on X-ray–induced optical reflectivity or transmission changes in solid samples, will be implemented and served to precisely measure the X-ray arrival time and time jitter at the European XFEL facility. The spectral encoding method applies a broadband chirped supercontinuum as a probe, resulting in a wavelength-to-time mapping because different spectral components arrive at different times. One could foresee to record the arrival time for each shot in the...

caltechlibrary/caltechdata_read: Initial Release of Backup Script

Thomas E. (Tom) Morrell
This is a minimal working version of a script to backup all files from the CaltechDATA repository (an Invenio 3 based repository).

Software Package for Nano-Photonic Platform for Atom-Light Interaction Project

Su-Peng Yu
This software package contains numerical simulation codes (COMSOL 3.5a, Lumerical FDTD) and CAD pattern generation code in Matlab/AutoCAD for the Nano-Photonic Platform for Atom-Light Interaction project.

tmorrell/caltechdata_plot: Update AWS Documentation

Tom Morrell
Includes new documentation with improved AWS setup.

caltechlibrary/dataset: Add indexing and search support with Bleve

Robert Doiel
_dataset_ now supports storage in S3 for collection objects, it supports creating Blevesearch indexes on local disc with _dsindexer_ and command line search with _dsfind_. + dsindexer will generate a Bleve index on a collection from a JSON definition file + dsfind is a command line search tool based on Bleve's QueryStringQuery and a Bleve index provided + output options include plain text, CSV and JSON formats

AAV-PHP.S transduction across multiple layers of the small intestine

Ken Chan & Viviana Gradinaru
A video demonstrating the transduction of AAV-PHP.S across multiple layers of the small intestine after optical clearing with refractive index matching solution (RIMS). Native GFP fluorescence (green) from ssAAV-PHP.S:CAG-NLS-GFP at 1 x 1012vg/mouse is shown. S100b staining (magenta) is shown for contrast.

Visualizing endogenous fluorescence throughout a cleared mouse vertebral body.

Ken Chan, Alon Greenbaum & Viviana Gradinaru
The movie shows an L4 vertebra body of a mouse. The intervertebral disks labeled in red can be seen in the vertical edge of the image. Longitudinal sections (30 µm thick) of the vertebra body at different depths can also be seen where the red channel shows Sox9+ cells and the green channel shows tissue autofluorescence.

Visualizing endogenous fluorescence throughout a cleared mouse tibia

Ken Chan, Alon Greenbaum & Viviana Gradinaru
MIP image of an entire mouse tibia rotated in different angles. Zoomed in digital sections (30 µm thick) of the tuberosity and the diaphysis are shown. The Sox9+ cells are labeled with tdTomato and tissue autofluorescence in green for structural orientation. When the red channel is turned off (Z = 2016 µm) some cellular processes can be seen.

Visualizing endogenous fluorescence throughout a cleared mouse femur

Ken Chan, Alon Greenbaum & Viviana Gradinaru
The movie shows a MIP image of an entire mouse femur at different angles and zoomed in view of the greater trochanter area. Digital sections with 30 µm thickness are shown at different bone depths at the greater trochanter. Sox9+ cells are labeled with red fluorescent protein (tdTomato), while tissue autofluorescence in green provides structural cues.

caltechlibrary/dataset: import and uuid support added

Robert Doiel
You can now import JSON documents from rows of a CSV file. The JSON documents can be created with a generated UUID.

tmorrell/caltechdata_plot: data.caltech.edu domain update

Thomas E. Morrell
Re-release for preservation. Includes domain update.

Microscopy image files for "An allosteric theory of transcription factor induction."

Manuel Razo-Mejia, Stephanie L. Barnes, Nathan M. Belliveau, Griffin Chure, Tal Einav & Rob Phillips
These data correspond to the raw microscopy images used to quantify fluorescence and compute the fold-change in gene expression due to the activity of the Lac repressor molecule in E. coli cells. These images were passed through an image analysis pipeline which segmented individual cells and computed the mean pixel value for each cell. This information was then used to compute the population average to be used in the determination of fold-change. These data are...

Flow Cytometry CSV Files for "An allosteric theory of transcription factor induction."

Manuel Razo-Mejia, Stephanie L. Barnes, Nathan M. Belliveau, Griffin Chure, Tal Einav & Rob Phillips
These data correspond to the comma separated value files converted from the original flow cytometry standard (.fcs) files generated from the experimental measurement of fluorescence on a MiltenyiBiotec MACSQuant flow cytometer. These files were passed through a processing pipeline to quantify the fold-change in gene expression due to action by the Lac repressor. These data are separated by the operator we examined. Eight different strains were measured for each dataset. Please see the main text...

Single-Cell Intensity Values Obtained From Microscopy for "An allosteric theory of transcription factor induction"

Manuel Razo-Mejia, Stephanie L. Barnes, Nathan M. Belliveau, Griffin Chure, Tal Einav & Rob Phillips
These data correspond to the single-cell mean intensity values obtained from microscopy images used to quantify fluorescence and compute the fold-change in gene expression due to the activity of the Lac repressor molecule in E. coli cells. These data were used to calculate the population mean fluorescence value. This information was then used to compute the fold-change in gene expression. These data are separated by the operator we examined. Eight different strains were measured for...

caltechlibrary/dataset: Preservation Release

Robert Doiel
Testing CaltechDATA integration.

tmorrell/caltechdata_plot: More efficient demo using /record API

Thomas E. Morrell
Avoids looping over all records as is required with the /records api

Flow Cytometry files for "An allosteric theory of transcription factor induction"

Manuel Razo-Mejia, Stephanie L. Barnes, Nathan M. Belliveau, Griffin Chure, Tal Einav & Rob Phillips
These data correspond to the original flow cytometry standard (.fcs) files generated from the experimental measurement of fluorescence on a MiltenyiBiotec MACSQuant flow cytometer. These files were passed through a processing pipeline to quantify the fold-change in gene expression due to action by the Lac repressor. These data are separated by the operator we examined. Eight different strains were measured for each dataset. Please see the main text or the paper website at http://rpgroup-pboc.github.io/mwc_induction for...

Identifying and Quantifying Mineral Abundance through VSWIR Microimaging Spectroscopy: A Comparison to XRD and SEM

Ellen K. Leask & Bethany L. Ehlmann
Sample: A rock was collected from an travertine conglomerate, containing ophiolite clasts. The rock was collected in Oman near the Samail ophiolite (collected Jan 2012; B. Ehlmann; analyzed in Leask & Ehlmann, 2016). Data included are: 1) UCIS (Ultra-Compact Imaging Spectrometer; B. Van Gorp et al) data cube. Data near ends of sensor may be suspect [e.g. under 500 nm, over 2500 nm]. {OM12L_001_UCIS_cube_masked} 2) EDS-SEM mosaic image cube (4x downsampled to despeckle, using a...

Quantified fluorescence information from microscopy images for "An allosteric theory of transcription factor induction"

Manuel Razo-Mejia, Stephanie L. Barnes, Nathan M. Belliveau, Griffin Chure, Tal Einav & Rob Phillips
These data correspond to the single-cell mean intensity values obtained from microscopy images used to quantify fluorescence and compute the fold-change in gene expression due to the activity of the Lac repressor molecule in E. coli cells. These data were used to calculate the population mean fluorescence value. This information was then used to compute the fold-change in gene expression. These data are separated by the operator we examined. Eight different strains were measured for...

Conceptual Design Report: Dynamic Laser Compression Experiments at the HED Instrument of European XFEL

U. Zastrau, M. McMahon, K. Appel, C. Baehtz, E. Brambrink, R. Briggs, T. Butcher, B. Cauble, B. Chen, H. Damker, C. Deiter, J. Eggert, K. Falk, L. Fletcher, S.H. Glenzer, S. Göde, M. Harmand, A. Higginbotham, Z. Konôpková, D. Kraus, H.-P. Liermann, M. Nakatsutsumi, A. Pelka, G. Priebe, R. Redmer … & S. Toleikis
Since the publication of the conceptual design report (CDR) for the High Energy Density Science (HED) instrument at the European XFEL in 2013, it has become clear that a community-wide discussion for shock and ramp compression experiments at the HED instrument is needed. The HED group at European XFEL and the Helmholtz International Beamline for Extreme Fields at the European XFEL user consortium (HIBEF UC) agreed to do this together. This CDR on dynamic laser...

zazasa/dummy: rel title

Salvatore.Zaza@Gmail.Com
repo desc

tmorrell/caltechdata_plot: More efficient demo using /record API

Tom Morrell
Avoids looping over all records as is required with the /records api

Resource Types

  • Software
    19
  • Dataset
    17
  • Text
    3
  • Model
    1

Publication Year

  • 2017
    24
  • 0000
    16

Data Centers

  • Caltech
    37
  • XFEL
    3