548 Works

Bradysia coprophila genome annotations Bcop_v1.0

John Urban

Prediction of Cattle Fever Tick Outbreaks in United States Quarantine Zone

Denise Bonilla, Matthew Messenger, Nicholas Manoukis, Pete Teel, Adalberto Pérez de León, Allan Auclair &

iStitch: GUI-based Image Stitching Software

James Kim

BBGD454: an Online Database for Blueberry Genomic Data Transcriptome analysis of Blueberry using 454 EST sequencing

Nadim Alkharouf
This database houses over 500,000 sequences that were generated and assembled into approximately 15,000 contigs, annotated and functionally mapped to Gene Ontology (GO) terms. Blueberry (Vaccinium corymbosum) is a major berry crop in the United States. Next generation sequencing methodologies, such as 454, have been demonstrated to be successful and efficient in producing a snap-shot of transcriptional activities during an organism’s developmental stage(s) or its response to biotic or abiotic stresses. Such application of this...

US Federal LCA Commons Life Cycle Inventory Unit Process Template

USDA National Agricultural Library, W Ingwersen & J Cooper
An excel template with data elements and conventions corresponding to the openLCA unit process data model. Includes LCA Commons data and metadata definitions, and a macro for preparing individual spreadsheets for importing into openLCA desktop applications.

Oncopeltus fasciatus Official Gene set v1.1

Iris M. Vargas Jentzsch, Daniel S. T. Hughes, Monica Poelchau, Hugh M. Robertson, Joshua B. Benoit, Andrew J. Rosendale, David Armisén, Elizabeth J. Duncan, Barbara M. I. Vreede, Chris G. C. Jacobs, Chloe Berger, Denielle L. Burnett, Chun-Che Chang, Yen-Ta Chen, Ariel D. Chipman, Andrew Cridge, Antonin Jean Johan Crumière, Peter Dearden, Deniz F. Erezyilmaz, Cassandra Extavour, Markus Friedrich, Thorsten Horn, Yi-Min Hsiao, Jeffery W. Jones, Tamsin E. Jones … & Kristen A. Panfilio
The Oncopeltus fasciatus genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The O. fasciatus research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.1. Oncopeltus fasciatus has been an established lab organism for over 60 years, and has been used for a wide range of studies from physiology to development and evolution. As a relatively conservative...

UNSODA 2.0: Unsaturated Soil Hydraulic Database. Database and program for indirect methods of estimating unsaturated hydraulic properties

A. Nemes
This database contains measured soil water retention, hydraulic conductivity, and water diffusivity data, as well as pedological information of some 790 soil samples from around the world. Quantifying water flow and chemical transport in the vadose zone typically requires knowledge of the unsaturated soil hydraulic properties. The UNsaturated SOil hydraulic DAtabase (UNSODA) was developed to provide a source of unsaturated hydraulic data and some other soil properties for practitioners and researchers. A first MS-DOS version...

Data from: BBGD: an online database for blueberry genomic data

Nadim Alkharouf
http://bioinformatics.towson.edu/BBGD/) is a public online database, and was developed for blueberry genomics. BBGD is both a sequence and gene expression database: it stores both EST and microarray data, and allows scientists to correlate expression profiles with gene function. Presently, the main focus of the database is the identification of genes in blueberry that are significantly induced or suppressed after low temperature exposure.

Data from: Population dynamics of an invasive forest insect and associated natural enemies in the aftermath of invasion

Jian J Duan, Leah S Bauer, Kristopher J Abell, Michael D Ulyshen & Roy G Van Driesche
Datasets archived here consist of all data analyzed in Duan et al. 2015 from Journal of Applied Ecology. Specifically, these data were collected from annual sampling of emerald ash borer immature stages and associated parasitoids on infested ash trees in Southern Michigan, where three introduced biological control agents had been released between 2007 - 2010. Detailed data collection procedures can be found in Duan et al. 2012, 2013, and 2015.

Sample of Mandan, North Dakota Aerial Image Dataset

None Available

USDA Database for the Flavonoid Content of Selected Foods. Release 3.1 (May 2014)

Seema Bhagwat, David B Haytowitz & Joanne M Holden

USDA's Expanded Flavonoid Database for the Assessment of Dietary Intakes - September 2014

Seema Bhagwat, David B Haytowitz & Shirley Wasswa-Kintu

U.S. Department of Agriculture (USDA) Pomological Watercolor Collection

United States Department Of Agriculture. National Agricultural Library

Agricultural Research Service (ARS) Corn, Ames, Iowa

Jerry Hatfield

What We Eat In America (WWEIA)

Food Surveys Research Group, U.S. Department Of Health, Centers For Disease Control & National Center For Health Statistics
What We Eat in America (WWEIA) is the dietary intake interview component of the National Health and Nutrition Examination Survey (NHANES). WWEIA is conducted as a partnership between the U.S. Department of Agriculture (USDA) and the U.S. Department of Health and Human Services (DHHS). DHHS is responsible for the sample design and data collection, and USDA is responsible for the survey’s dietary data collection methodology, maintenance of the databases used to code and process the...

Data from: Long-Term Agroecosystem Research in the Central Mississippi River Basin: Goodwater Creek Experimental Watershed Flow Data

Ann Edahl
Flow monitoring in Goodwater Creek Experimental Watershed started in 1971 at three nested watersheds ranging from 12 to 73 km2. Since then, runoff or stream flow has been measured at 14 plots, three fields, and 12 additional stream sites ranging from 0.0034 to 6067 km2 in the Central Mississippi River Basin. The data set presented here documents discharge across a range of catchment sizes in an area known for its high runoff potential. It constitutes...

Cimex Lectularius Genome Annotations v0.5.3

Daniel S. T. Hughes, Hsu Chao, Joshua B. Benoit, Jiaxin Qu, Kim C. Worley, Shwetha C. Murali & Stephen Richards
The Baylor College of Medicine recently sequenced and annotated the Cimex lectularius genome as part of the i5k pilot project. The C. lectularius research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. The bed bug, Cimex lectularius, is a model organism for understanding dermonecrotic envenomation (sphingomylinase D). A key focus of research to understand neurotic fractions in venom. The bed bug also provides appropriate phylogenetic sampling...

USDA National Agricultural Statistics Service (NASS) Agricultural Chemical Use Database

Yulu Xia & Scott Shimmin

LCA Domain Metadata Schema Inventory

Zac Coventry

USDA LCA Commons Data Submission Guidelines

National Agricultural Library

Gridded Soil Survey Geographic Database (gSSURGO)

United States Department Of Agriculture Natural Resources Conservation Service

Data from: Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection

Adriana Garcia-Ruiz, John B. Cole, Paul M. VanRaden, George R. Wiggans, Felipe J. Ruiz-Lopez & Curtis P. Van Tassell

APLE : Annual Phosphorus Loss Estimator Tool

Peter Vadas

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