21 Works

Introductory presentation of Sphinx and Linters in Python

Linus Östberg
A basic introduction to the use of Sphinx and a few different Python linters.

Introductory presentation of Sphinx and Linters in Python

Linus Östberg
A basic introduction to the use of Sphinx and a few different Python linters.

COVID-19 Data Portal - data sharing for accelerating research

Arnold Kochari
Slides presented at the 'FAIR principles in life science research practice' event, organised by ELIXIR-SE/NL and SciLifeLab Data Centre on December 9, 2021.

The Swedish COVID-19 Data Portal (https://covid19dataportal.se/) was launched in June 2020 to support the open sharing and reuse of data related to COVID-19 and SARS-CoV-2 from Swedish research institutes. Open data sharing is important for accelerating research, but being shared openly does not necessarily mean that the data is good quality or useful....

Fluent Python nuggets. A brief presentation.

Per Kraulis
Some nuggets of Python coding wisdom out of the book Fluent Python by Lucian Ramalho. A light-weight presentation.

Life Science Data Management lecture

Niclas Jareborg
Video recording of a general lecture about Data Management practices for Life Science in three parts, and a pdf with the slides.
Note! The sound for the movie in part 3 doesn't work. Please go to the Youtube clip and watch it: https://www.youtube.com/watch?v=N2zK3sAtr-4.

Life Science Data Management lecture

Niclas Jareborg
Video recording of a general lecture about Data Management practices for Life Science in three parts, and a pdf with the slides.
Note! The sound for the movie in part 3 doesn't work. Please go to the Youtube clip and watch it: https://www.youtube.com/watch?v=N2zK3sAtr-4.

Conceptualising the Mastery Rubric for Bioinformatics - Applications to training & professional development

Jessica Lindvall, Teresa Attwood, Allegra Via & Rochelle Tractenberg
Target audience: Life Science community
Learning Outcomes: By the end of the presentation you will be able to:* describe the concepts of the Mastery Rubric* identify the KSAs and Stages* describe the concepts of the Performance Level Descriptors (PLDs)* start to use the MR-Bi could be applied to your courses and/or Professional developmental trajectory

Abstract: The recorded presentation introduces the Mastery Rubric for Bioinformatics, describing its structure and how it charts performance as learners traverse a...

COVID-19 Data Portal - data sharing for accelerating research

Arnold Kochari
Slides presented at the 'FAIR principles in life science research practice' event, organised by ELIXIR-SE/NL and SciLifeLab Data Centre on December 9, 2021.

The Swedish COVID-19 Data Portal (https://covid19dataportal.se/) was launched in June 2020 to support the open sharing and reuse of data related to COVID-19 and SARS-CoV-2 from Swedish research institutes. Open data sharing is important for accelerating research, but being shared openly does not necessarily mean that the data is good quality or useful....

ELIXIR Proteomics Community - Connection with nf-core

Phil Ewels
A joint effort on the standardization of analytics workflows.
Phil Ewels (@ewels) will give a talk followed by discussion for one of the ELIXIR Proteomics Community regular monthly meetings, to speak about nf-core and how the two communities can work together.
You can catch up with the YouTube video at https://youtu.be/vxDv_hVkycM.

Microscopy images and movies supporting the publication: \"Real-time measurements of aminoglycoside effects on protein synthesis in live cells\"

Javier Aguirre Rivera, Jimmy Larsson, Ivan L Volkov, , & Magnus Johansson
This repository contains microscopy movies and images supporting the publication: Aguirre Rivera et al. (2021) Real-time measurements of aminoglycoside effects on protein synthesis in live cells. Proc Natl Acad Sci U S A, DOI: 10.1073/pnas.2013315118
A detailed list of files and file organisation can be found in readme.pdf.

SciLifeLab Data Centre presentation at Fellow's Retreat 2020

Johan Rung, Hanna Kultima & Per Kraulis
This presentation was given by the SciLifeLab Data Centre to inform about services at the Fellow's Retreat on 2020-10-20.

Microscopy images and movies supporting the publication: \"Real-time measurements of aminoglycoside effects on protein synthesis in live cells\"

Javier Aguirre Rivera, Jimmy Larsson, Ivan L Volkov, , & Magnus Johansson
This repository contains microscopy movies and images supporting the publication: Aguirre Rivera et al. (2021) Real-time measurements of aminoglycoside effects on protein synthesis in live cells. Proc Natl Acad Sci U S A, DOI: 10.1073/pnas.2013315118
A detailed list of files and file organisation can be found in readme.pdf.

Time-lapse Movies for Geiser et al 2021, mBio, \"Salmonella enterica Serovar Typhimurium Exploits Cycling through Epithelial Cells to Colonize Human and Murine Enteroids\"

Petra Geiser & Mikael Sellin
Time-lapse movies for Geiser et al 2021, mBio
"Salmonella enterica Serovar Typhimurium Exploits Cycling through Epithelial Cells to Colonize Human and Murine Enteroids"

Abstract:
Enterobacterial pathogens infect the gut by a multistep process, resulting in colonization of both the lumen and the mucosal epithelium. Due to experimental constraints, it remains challenging to address how luminal and epithelium-lodged pathogen populations cross-feed each other in vivo. Enteroids are cultured three-dimensional miniature intestinal organs with a single layer of primary intestinal...

Talk at Alicante's metagenomic forum

Moritz Buck, Stefan Bertilsson &
Zoom-presentation on mOTUlizer from the 18th of september 2020, at University of Alicante's MEtagenomic forum, organised by Francisco Eduardo Rodriguez Valera, lead by Asier Zaragoza.

Talk at Alicante's metagenomic forum

Moritz Buck, Stefan Bertilsson &
Zoom-presentation on mOTUlizer from the 18th of september 2020, at University of Alicante's MEtagenomic forum, organised by Francisco Eduardo Rodriguez Valera, lead by Asier Zaragoza.

ELIXIR Proteomics Community - Connection with nf-core

Phil Ewels
A joint effort on the standardization of analytics workflows.
Phil Ewels (@ewels) will give a talk followed by discussion for one of the ELIXIR Proteomics Community regular monthly meetings, to speak about nf-core and how the two communities can work together.
You can catch up with the YouTube video at https://youtu.be/vxDv_hVkycM.

SciLifeLab Data Repository Launch

Johan Rung, Megan Hardeman, Vicent Pelechano, Jonne Rietdijk, Mikael Sellin & Wolmar Nyberg Åkerström
Presentations given at the digital launch event of the SciLifeLab Data Repository on May 7th 2021. The event was organized by SciLifeLab Data Centre. This event was recorded, a link to the recording is provided in the 'references' field of this item.
Event agenda: Introduction - Johan Rung (SciLifeLab Data Centre)Storing, sharing, and citing your data with SciLifeLab's Figshare - Megan Hardeman (Figshare)User perspectives - Vicent Pelechano (Karolinska Institutet)- Jonne Rietdijk (Uppsala University- Mikael Sellin (Uppsala...

Conceptualising the Mastery Rubric for Bioinformatics - Applications to training & professional development

Jessica Lindvall, Teresa Attwood, Allegra Via & Rochelle Tractenberg
Target audience: Life Science community
Learning Outcomes: By the end of the presentation you will be able to:* describe the concepts of the Mastery Rubric* identify the KSAs and Stages* describe the concepts of the Performance Level Descriptors (PLDs)* start to use the MR-Bi could be applied to your courses and/or Professional developmental trajectory

Abstract: The recorded presentation introduces the Mastery Rubric for Bioinformatics, describing its structure and how it charts performance as learners traverse a...

Fluent Python nuggets. A brief presentation.

Per Kraulis
Some nuggets of Python coding wisdom out of the book Fluent Python by Lucian Ramalho. A light-weight presentation.

SciLifeLab Data Centre presentation at Fellow's Retreat 2020

Johan Rung, Hanna Kultima & Per Kraulis
This presentation was given by the SciLifeLab Data Centre to inform about services at the Fellow's Retreat on 2020-10-20.

SciLifeLab Data Repository Launch

Johan Rung, Megan Hardeman, Vicent Pelechano, Jonne Rietdijk, Mikael Sellin & Wolmar Nyberg Åkerström
Presentations given at the digital launch event of the SciLifeLab Data Repository on May 7th 2021. The event was organized by SciLifeLab Data Centre. This event was recorded, a link to the recording is provided in the 'references' field of this item.
Event agenda: Introduction - Johan Rung (SciLifeLab Data Centre)Storing, sharing, and citing your data with SciLifeLab's Figshare - Megan Hardeman (Figshare)User perspectives - Vicent Pelechano (Karolinska Institutet)- Jonne Rietdijk (Uppsala University- Mikael Sellin (Uppsala...

Registration Year

  • 2021
    8
  • 2020
    13

Resource Types

  • Audiovisual
    21