147 Works

The WikiPathways and EU NanoSafety Cluster Use Cases

Egon Willighagen
Use cases of grant information in Wikidata to support projects like WikiPathways and the EU NanoSafety Cluster.

The WikiPathways and EU NanoSafety Cluster Use Cases

Egon Willighagen
Use cases of grant information in Wikidata to support projects like WikiPathways and the EU NanoSafety Cluster.

Identifier interoperability with the BridgeDb framework

Egon Willighagen, The BridgeDb Project & Chris Evelo
Poster presented at the BioSB 2018 and ELIXIR All Hands 2018 meetings.

Identifier interoperability with the BridgeDb framework

Egon Willighagen, The BridgeDb Project & Chris Evelo
Poster presented at the BioSB 2018 and ELIXIR All Hands 2018 meetings.

Open chemistry registry and mapping platform based on open source cheminformatics toolkits

Valery Tkachenko, Denise Slenter, Nina Jeliazkova, Anna Gaulton, Antony Williams, Christoph Steinbeck, Chris Evelo & Egon Willighagen
Presentation at the American Chemical Society Fall meeting Aug 2017

Open chemistry registry and mapping platform based on open source cheminformatics toolkits

Valery Tkachenko, Denise Slenter, Nina Jeliazkova, Anna Gaulton, Antony Williams, Christoph Steinbeck, Chris Evelo & Egon Willighagen
Presentation at the American Chemical Society Fall meeting Aug 2017

POSTER<< Chemistry Identifier Mapping to Pathway Databases using Ontologies: Expanding metabolomics analysis in WikiPathways with ChEBI >>POSTER

De Sl, Egon Willighagen & Https://Orcid.Org/0000-0002-5301-3142
Poster presented
at BioSB 2018 (https://www.aanmelder.nl/biosb2018#.WwrDKKSFOM8 )
and
at the 11th International Conference on Chemical Structures, May 27-31 2018, Noordwijkerhout, The Netherlands (http://www.int-conf-chem-structures.org/registration.html).

POSTER<< Chemistry Identifier Mapping to Pathway Databases using Ontologies: Expanding metabolomics analysis in WikiPathways with ChEBI >>POSTER

De Sl, Egon Willighagen & Https://Orcid.Org/0000-0002-5301-3142
Poster presented
at BioSB 2018 (https://www.aanmelder.nl/biosb2018#.WwrDKKSFOM8 )
and
at the 11th International Conference on Chemical Structures, May 27-31 2018, Noordwijkerhout, The Netherlands (http://www.int-conf-chem-structures.org/registration.html).

Wikidata and Scholia as a hub linking chemical knowledge

Egon Willighagen, Denise Slenter, Daniel Mietchen, Chris Evelo & Finn Nielsen
Poster presented at the 11th International Conference on Chemical Structures, May 27-31 2018, Noordwijkerhout, The Netherlands.

Wikidata and Scholia as a hub linking chemical knowledge

Egon Willighagen, Denise Slenter, Daniel Mietchen, Chris Evelo & Finn Nielsen
Poster presented at the 11th International Conference on Chemical Structures, May 27-31 2018, Noordwijkerhout, The Netherlands.

MCDCalc Values for Enantioselective α-Amidoalkylation Reac.

H. Gonzalez-Diaz, Cristian Robert Munteanu, Carlos Fernandez-Lozano & Egon Willighagen
Data set of MCDCalc Descriptors for Chiral Brønsted Acid-Catalyzed Enantioselective α-Amidoalkylation Reactions

MCDCalc Values for Enantioselective α-Amidoalkylation Reac.

H. Gonzalez-Diaz, Cristian Robert Munteanu, Carlos Fernandez-Lozano & Egon Willighagen
Data set of MCDCalc Descriptors for Chiral Brønsted Acid-Catalyzed Enantioselective α-Amidoalkylation Reactions

Encoding Units And Unit Types In Rdf Using Qudt

Egon Willighaen
This guideline describes how units for data are preferably encoded, setting a standard that can then be handled uniformly by data consumers.

Encoding Units And Unit Types In Rdf Using Qudt

Egon Willighaen
This guideline describes how units for data are preferably encoded, setting a standard that can then be handled uniformly by data consumers.

Dataset Descriptions For The Open Pharmacological Space

Christian Brenninkmeijer, Chris Evelo, Carole Goble, Alasdair J G Gray, Lee Harland, Robert Stevens, Andra Waagmeester & Egon Willighagen
This is a specification for the metadata to described datasets, and the linksets that relate them, to enable their use within the Open PHACTS discovery platform. The specification defines the metadata properties that are expected to describe datasets and linksets; detailing the creation and publication of the dataset. Details of deploying dataset descriptions and an exchange format for linkset files are also given.

Dataset Descriptions For The Open Pharmacological Space

Christian Brenninkmeijer, Chris Evelo, Carole Goble, Alasdair J G Gray, Lee Harland, Robert Stevens, Andra Waagmeester & Egon Willighagen
This is a specification for the metadata to described datasets, and the linksets that relate them, to enable their use within the Open PHACTS discovery platform. The specification defines the metadata properties that are expected to describe datasets and linksets; detailing the creation and publication of the dataset. Details of deploying dataset descriptions and an exchange format for linkset files are also given.

Guidelines For Exposing Data As Rdf In Open Phacts

Carina Haupt, Andra Waagmeester, Marc Zimmermann & Egon Willighagen
This is a “how to” guide for exposing your data in RDF in the Open PHACTS system.

Guidelines For Exposing Data As Rdf In Open Phacts

Carina Haupt, Andra Waagmeester, Marc Zimmermann & Egon Willighagen
This is a “how to” guide for exposing your data in RDF in the Open PHACTS system.

Geospatial Data And Scholia

Finn Årup Nielsen, Daniel Mietchen & Egon Willighagen
Scholia is a website that displays information about scientific works represented in Wikidata. It extracts the information via queries to the extended SPARQL endpoint Wikidata Query Service (WDQS). Scholia handles geospatial data that may be rendered on maps with the default map output format available in WDQS. We describe the use of geospatial data in Scholia, how we combine it with other data—e.g., on topics, events and affiliations—and present a set of user stories to...

Geospatial Data And Scholia

Finn Årup Nielsen, Daniel Mietchen & Egon Willighagen
Scholia is a website that displays information about scientific works represented in Wikidata. It extracts the information via queries to the extended SPARQL endpoint Wikidata Query Service (WDQS). Scholia handles geospatial data that may be rendered on maps with the default map output format available in WDQS. We describe the use of geospatial data in Scholia, how we combine it with other data—e.g., on topics, events and affiliations—and present a set of user stories to...

Identification and development of adverse outcome pathways

Marvin Martens, Egon Willighagen & Chris Evelo
The vision of EU-ToxRisk is to allow the paradigm shift of toxicity assessment, from in vivo testing towards reliable, animal-free hazard and risk assessment of chemicals. EUToxRisk developed various case studies on five main topics of toxicity: liver, lung, kidney, neuronal system and developmental and reproductive toxicity. The purpose of these case studies is to provide a proof of concept for the use of AOPs by integrating new developments in in vitro and in silico...

Identification and development of adverse outcome pathways

Marvin Martens, Egon Willighagen & Chris Evelo
The vision of EU-ToxRisk is to allow the paradigm shift of toxicity assessment, from in vivo testing towards reliable, animal-free hazard and risk assessment of chemicals. EUToxRisk developed various case studies on five main topics of toxicity: liver, lung, kidney, neuronal system and developmental and reproductive toxicity. The purpose of these case studies is to provide a proof of concept for the use of AOPs by integrating new developments in in vitro and in silico...

Egonw/Ci-Advent-2017: Compound Interest Christmas Advent 2017 - Version 1

Andy Brunning & Egon Willighagen
Archive of the Compound Interest Christmas Advent 2017. Includes: the images links to Scholia (GUI around Wikidata)

Egonw/Ci-Advent-2017: Compound Interest Christmas Advent 2017 - Version 1

Andy Brunning & Egon Willighagen
Archive of the Compound Interest Christmas Advent 2017. Includes: the images links to Scholia (GUI around Wikidata)

The future of metabolomics in ELIXIR.

Merlijn Van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez, Warwick B Dunn, , Franck Giacomoni, Alejandra Gonzalez-Beltran, Thomas Hankemeier, Kenneth Haug, Jose L Izquierdo-Garcia, Rafael C Jimenez, Fabien Jourdan, Namrata Kale, Maria I Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Pablo Moreno, Nicholas K Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko … & Christoph Steinbeck

Resource Types

  • Dataset
    52
  • Text
    33
  • Collection
    31
  • Software
    14
  • Image
    11
  • Audiovisual
    6

Publication Year

  • 2018
    18
  • 2017
    56
  • 2016
    26
  • 2015
    12
  • 2014
    8
  • 2013
    21
  • 2012
    4
  • 2011
    2

Registration Year

  • 2018
    27
  • 2017
    53
  • 2016
    46
  • 2015
    7
  • 2014
    4
  • 2013
    7
  • 2012
    3

Data Centers

  • figshare Academic Research System
    121
  • ZENODO - Research. Shared.
    23
  • U.S. Environmental Protection Agency
    2
  • University of Cambridge
    1