418 Works
Generic rat heart scaffold
Richard Christie, Mahyar Osanlouy & Peter Hunter
Annotated heart scaffold for rat available for registration of segmented neural anatomical-functional mapping of cardiac neural circuits.
Generic mouse stomach scaffold
Mabelle Lin, Richard Christie & Peter Hunter
Annotated mouse stomach scaffold available for registration of segmented neural anatomical-functional mapping of enteric neural circuits.
Quantified morphology of the human vagus nerve with anti-claudin-1
Nicole A Pelot, J Ashley Ezzell, Gabriel B Goldhagen, Jake E Cariello, Kara A Clissold & Warren M Grill
Quantified vagus nerve morphology across species
Jupyter Voila Interactive Data Analysis
Katie Zhuang & Million Mulugeta
Example use of voila - a JupyterLab extension that creates interactive web pages from an iPython Notebook. The example goes through data exploration and analysis of effects of stimulation on colon motility, based on a SPARC dataset.
Spatial mapping and contextualization of axon subtypes innervating the long bones of C3H and B6 mice
Madelyn Lorenz, Jennifer M Brazill, Alec Beeve, Ivana Shen & Erica L Scheller
A dataset containing high-resolution confocal images of tranverse cross-sections of the C57BL/6J and C3H/HeJ femur and tibia that have been stained with anti-CGRP (sensory nerve), anti-TH (sympathetic nerve), anti-perilipin (adipocytes), and dapi (nuclei)
Jupyterlab exploration of computational models of unmyelinated peripheral axons
Katie Zhuang & Nicole A Pelot
Example JupyterLab environment used to compile, run and display results of neural computational models, based on a SPARC dataset (https://doi.org/10.26275/iiwv-k07f)
Acute Wired Colonic Monitor of Conscious Activity (ColoMOCA) implantation in pig bowel
Margot Damaser, Dennis Bourbeau, Steve Majerus, Ian McAdams, Jun Yang, Anna Rietsch, Brett Hanzlicek & Aref Smiley
A FitBit for the Bladder
Generic human heart scaffold
Richard Christie, Mahyar Osanlouy & Peter Hunter
Annotated heart scaffold for human available for registration of segmented neural anatomical-functional mapping of cardiac neural circuits.
Generic rat brainstem scaffold
Shelley Fong, Arti Sukasem, Richard Christie & Peter Hunter
whole-body
Human whole-body with embedded organs
Elias Soltani, Richard Christie & Peter Hunter
The generated body scaffold was fitted to data and the organ fiducial markers were embedded in the human whole-body. The landmarks were obtained from image data and also were defined in the body scaffold.
Simulations of pelvic and vagus neural interface anatomy-dependent stimulus and recording properties
Calvin D Eiber, Sophie Payne, Peregrine Osborne, Janet R Keast & James Fallon
ViNERS (Visceral Nerve Ensemble Recording & Stimulation) peripheral neural interface modelling environment
Generic human stomach scaffold
Mabelle Lin, Richard Christie & Peter Hunter
Annotated human stomach scaffold available for registration of segmented neural anatomical-functional mapping of enteric neural circuits.
Generic cat bladder scaffold
Zohreh Ekhlasi, Richard Christie & Peter Hunter
Annotated bladder scaffold for cat available for registration of segmented neural anatomical-functional mapping of LUT neural circuits.
Small Enteric Neural Network Simulator
Joel Bornstein
This network is designed to study the interactions of different types of synaptic potentials in a realistic enteric neuron and the effects of varying the voltage-dependent ion channels in the output neuron membrane. Caption: Simulated neuron voltage
Multi-scale rabbit cardiac electrophysiology models
Manuel Guidon, Mao-Tsuen Jeng, Pei-Chi Yang & Timothy J. Lewis
A computational workflow for integration and implementation of a reusable and reproducible rabbit cardiac multi-scale electrophysiology model. Caption: Illustration of ion channels and action potential propogation in cardiac tissue
3D Visualization
Esra Neufeld
Three-dimensional representation of the effects of a stimulating electrode around a bundle of nerve fibers. Caption: Image of neuron stimulation model with electric field lines and gradient.
Influence of acute thoracolumbar root nerves electrical stimulation on colonic motility in anesthetized male Yucatan minipigs
Muriel Larauche, Yushan Wang, Yan-Peng Chen, Wentai Liu & Million Mulugeta
Acute thoracolumbar nerve electrical stimulation; monitor colon manometry in all regions (proximal, transverse and distal) before, during and post stimulation.
Multi-scale rabbit cardiac electrophysiology models
Timothy J. Lewis, Mao-Tsuen Jeng & Pei-Chi Yang
A computational workflow for integration and implementation of a reusable and reproducible rabbit cardiac multi-scale electrophysiology model.
Caption: Illustration of ion channels and action potential propogation in cardiac tissue.
Multi-scale human cardiac electrophysiology models
Pei-Chi Yang, Colleen E. Clancy, Timothy J. Lewis & Mao-Tsuen Jeng
A computational workflow for integration and implementation of a reusable and reproducible human cardiac multi-scale electrophysiology model.
Caption: Illustration of ion channels and action potential propogation in cardiac tissue
Multi-scale rabbit cardiac electrophysiology models
Timothy J. Lewis, Mao-Tsuen Jeng & Pei-Chi Yang
A computational workflow for integration and implementation of a reusable and reproducible rabbit cardiac multi-scale electrophysiology model.
Caption: Illustration of ion channels and action potential propogation in cardiac tissue.
Fabbri-based composite SAN model
Alan Garny & Peter Hunter
CellML version of the Fabbri et al. 2017 human sinoatrial node (SAN) cell model and an ODE-based version of the Gerstner & Kistler 2002 brain stem model combined to demonstrate the effect of brain stem activity on heart rate
Chemogenetic activation or inhibition of cholinergic or nitrergic myenteric neurons of mouse colon
Thomas Gould
Tension files of the colon after chemogenetic activation and inhibition of of cholinergic or nitrergic myenteric neurons
Optogenetic inhibition of nitrergic and cholinergic neurons of murine colonic myenteric plexus
Dante Heredia & Thomas Gould
Tension files of the colon after optogenetic inhibition of cholinergic or nitrergic myenteric neurons
Generic mouse colon scaffold
Mabelle Lin, Richard Christie & Peter Hunter
Annotated mouse colon scaffold available for registration of segmented neural anatomical-functional mapping of enteric neural circuits.
CLARITY and three-dimensional (3D) imaging of the mouse and porcine colonic innervation
Pu-Qing Yuan, Lixin Wang, Million Mulugeta & Yvette Tache
3D imaging, colon, innervation, enteric nerve system, phenotyping