348 Works

Jupyter Voila Interactive Data Analysis

Katie Zhuang & Million Mulugeta
Example use of voila - a JupyterLab extension that creates interactive web pages from an iPython Notebook. The example goes through data exploration and analysis of effects of stimulation on colon motility, based on a SPARC dataset.

Jupyterlab exploration of computational models of unmyelinated peripheral axons

Katie Zhuang & Nicole A Pelot
Example JupyterLab environment used to compile, run and display results of neural computational models, based on a SPARC dataset (https://doi.org/10.26275/iiwv-k07f)

Acute Wired Colonic Monitor of Conscious Activity (ColoMOCA) implantation in pig bowel

Margot Damaser, Dennis Bourbeau, Steve Majerus, Ian McAdams, Jun Yang, Anna Rietsch, Brett Hanzlicek & Aref Smiley
A FitBit for the Bladder

Transcriptomic and neurochemical analysis of the stellate ganglia in mice highlights sex differences

Richard Bayles, Quin Denfeld, William Woodward & Beth Habecker
This dataset contains baseline measurements of mouse stellate ganglia using RNAseq

3D Visualization

Esra Neufeld
Three-dimensional representation of the effects of a stimulating electrode around a bundle of nerve fibers. Caption: Image of neuron stimulation model with electric field lines and gradient.

Multi-scale rabbit cardiac electrophysiology models

Ignacio Pascual & Manuel Guidon
This is the first approach to publish a dataset from osparc

Multi-scale rabbit cardiac electrophysiology models

Ignacio Pascual & Manuel Guidon
This is the first approach to publish a dataset from osparc

2D Plot

Ignacio Pascual
Interactive example for plotting gene expression using the RAW Graphs platform. Data are obtained from Prof. Leah Resnikov at University of Florida.

SPARC Nerve Activity Predictor (SNAP)

Matthew P Ward
Interactive, AI-informed computational model of stimulus parameter-dependent vagal nerve responses resulting from bipolar, constant-current stimuli.

2D Plot

Ignacio Pascual
Interactive example for plotting gene expression in neonatal piglets when they are exposed to intra-airway acid or saline (control). Data are obtained from Prof. Leah Resnikov at University of Florida.

Multi-scale rabbit cardiac electrophysiology models

Ignacio Pascual & Manuel Guidon
A computational workflow for integration and implementation of a reusable and reproducible rabbit cardiac multi-scale electrophysiology model.

2D Plot

Ignacio Pascual
Interactive example for plotting gene expression using the RAW Graphs platform. Data are obtained from Prof. Leah Resnikov at University of Florida.

opencor-py model

Ignacio Pascual
Computes the cardiac myocyte action potential for the sympathetic drive input setting on the MAP-Core portal. Caption: Illustration of a whole body flatmap (centre) and central nervous system map (left) with a neural pathway highlighted.

Anatomical Model Viewer

Ignacio Pascual
Render different human tissue types in three dimensions with the option to highlight or segment parts of: musculature, vasculature, nerve tissue, viscera and skeletal structure.

Identification of peripheral neural circuits that regulate heart rate using optogenetic and viral vector strategies

Benjamin Deverman, Beth Gabris-Weber, Charless Fowlkes, Guy Salama, Heike Munzberg, Jeffrey Ardell, John Tompkins, Ken Chan, Maria Jordan, Peter Hanna, Pradeep Rajendran, Rosemary Challis, Sarah Hiyari & Viviana Gradinaru
iDISCO-cleared mouse hearts with PGP9.5 staining for neural structures.

Anatomical Model Viewer

Ignacio Pascual
Render different human tissue types in three dimensions with the option to highlight or segment parts of: musculature, vasculature, nerve tissue, viscera and skeletal structure. Caption: Screenshot of anatomical viewer with subject Jeduk

Mapping of ICN Neurons in a 3D Reconstructed Rat Heart

Alison Moss, Clara Leung, James S. Schwaber, Jin Chen, Jonathan Gorky, Leonard Eisenman, Maci Heal, Navid Farahani, Rajanikanth Vadigepalli, Shaina Robbins, Sirisha Achanta, Steve England, Susan Tappan, Todd Huffman & Zixi (Jack) Cheng
The distribution of neurons in the intrinsic cardiac nervous system (ICN) were mapped and visualized in a 3D reconstruction of a male rat heart.

Multi-scale rabbit cardiac electrophysiology models

Manuel Guidon, Mao-Tsuen Jeng, Pei-Chi Yang & Timothy J. Lewis
A computational workflow for integration and implementation of a reusable and reproducible rabbit cardiac multi-scale electrophysiology model. Caption: Illustration of ion channels and action potential propogation in cardiac tissue

Rat Vagus Nerve Stained with Masson's Trichrome

Nicole A. Pelot, Gabriel B. Goldhagen, Jake E. Cariello, Kara A. Clissold, Warren M. Grill & J. Ashley Ezzell
Micrographs of cross sections of cervical and abdominal rat vagus nerve stained with Masson's trichrome.

Influence of left vagal stimulus pulse parameters on vagal and gastric activity in rat

Bartek Rajwa, Matthew Ward, Robert Phillips, Terry L. Powley, Thomas V Nowak & Zhenjun T Tan
Influence of left vagal stimulus pulse parameters on vagal and gastric activity in rat.‚Äč

Quantification of the relationship between rat gastric nerve fibers and enteroendocrine cells (EEC)

Billie Hunne, John B. Furness, Martin J. Stebbing & Rachel M. McQuade
Enteroendocrine cells (EECs) in the stomach are thought to modulate the desire to eat via nerves that send signals from the gut to the brain. In this dataset we examine the structural relationship between nerve endings and EECs in the rat gastric mucosa.

Multi-scale rabbit cardiac electrophysiology models

Ignacio Pascual & Manuel Guidon
Colleen Clancy Single Cell solver with a file picker and PostPro viewer

Spatial distribution and morphometric characterization of vagal afferents associated with the myenteric plexus of the rat stomach

Bartek Rajwa, Charlene Evans, Deborah M Jaffey, Elizabeth Baronowsky, Robert J Phillips & Terry L Powley
Spatial distribution and morphometric characterization of vagal afferents (specifically: intraganglionic laminar endings (IGLEs)) associated with the myenteric plexus of the rat stomach.

SPARC Nerve Activity Predictor (SNAP)

Matthew P Ward
Interactive, AI-informed computational model of stimulus parameter-dependent vagal nerve responses resulting from bipolar, constant-current stimuli.

Anatomical Model Viewer

Ignacio Pascual
Render different human tissue types in three dimensions with the option to highlight or segment parts of: musculature, vasculature, nerve tissue, viscera and skeletal structure.

Registration Year

  • 2022
    9
  • 2021
    140
  • 2020
    88
  • 2019
    111

Resource Types

  • Dataset
    348