49 Works

Myosin II-mediated cell shape changes and cell intercalation contribute to primitive streak formation

Emil Rozbicki, , Antti I. Karjalainen, , Helen M. Sang, René Martin, , Michael P. MacDonald & Cornelis J. Weijer
The dataset shown represents a timelapse sequence showing cell and tissue dynamics during primitive streak formation in chick embryo. The data were acquired using Myr-GFP embryos and a custom built light-sheet microscope. The sequence shows the developmental period covering the time interval from the freshly laid egg (stage EGXIII), prior to the onset of tissue movement until the end of the formation of the primitive streak (Stage HH4). Shown here is only one of the...

Analysis of coupled axial and lateral deformation of roots in soil — figure data

Meijer, Muir Wood, Knappett, Bengough & Liang Teng
This data archive is linked to the following publication: ‘Analysis of coupled axial and lateral deformation of roots in soil’ by G.J. Meijer, D. Muir Wood, J.A. Knappett, A.G. Bengough and T. Liang, as published in the International Journal for Analytical and Numerical Methods in Geomechanics (https://doi.org/10.1002/nag.2880). This data achieve contains all data required to replot any graph in this manuscript (Figures 8-18 and 20-22). Note that this paper is covered by a CC-BY license,...

Chemical composition of different sources of diesel fuel

Nic Daeid & Mat-Desa
Diesel samples were collected directly from eight different public fuelling stations in Glasgow, Scotland. Samples of 10, 25, 50, 75, 90, and 95% evaporated product were prepared, resulting in 56 samples in total which were analyzed using gas chromatography–mass spectrometry.

A Ground Truth Data Set of Gas Chromatography mass spectrometry (GCMS) Analysed Synthesised Methylenedioxymethylamphetamine (MDMA)

Jonathan Miller, Niamh NicDaeid & Roberto Puch-Solis
An open source format data set of Methylenedioxymethylamphetamine. This data set was derived from a PhD project which involved the repetitive chemical synthesis of a series of methylenedioxymethylamphetamine (MDMA) samples following a series of known synthetic chemical routes. Controlled drug samples are normally chemically analysed to determine their identity and in some cases, their purity. There are also circumstances where a more broad chemical characterisation of drug samples may also be required. This involves investigating...

Leptin-based hexamers facilitate memory and prevent amyloid-driven AMPA receptor internalisation and neuronal degeneration

Jenni Harvey
Datasets in support of the paper Leptin-based hexamers facilitate memory and prevent amyloid-driven AMPA receptor internalisation and neuronal degeneration

Combined GWAS of metaformin glycaemic reponse in 1372 GoDARTS patients

Kaixin Zhou
This dataset includes the GWAS screening results that were used to the supplementary Figure 1 in the paper “Variation in the Glucose Transporter gene SLC2A2 is associated with glycaemic response to metformin” by Zhou et al. in Nature Genetics. Brief descriptions of the 12 columns in this file are in the following table. Column Descriptions SNP SNP identifier CHR Chromosome BP Base pair (NCBI build 36) EFFECT_ALLELE The effect allele NMISS Number of subjects in...

Centrifuge test data - Influence of initial stress distribution on liquefaction induced settlement of shallow foundations

Daniele Bertalot & Andrew Brennan
The files are databases in Matlab format (.mat files). - Each file contains processed instrument readings relative to a given centrifuge test. Three datasets are given, relative to centrifuge test BD5, BD7 and BD8 respectively. - Each dataset consists of three variables: ACC (accelerometers readings), PPT (Pore Pressure Transducers readings), LVDT (Linear Variable Differential Transducers readings). - variable ACC consists of a matrix of 15 columns: first column represents the reference time vector, while columns...

Whole Genome Sequencing Variant Call Files for Trypanosoma brucei clones resistant to nifurtimox or fexinidazole

Alan Fairlamb, & Matthew Berriman
Genomic DNA prepared from parental and drug resistant clones from T.brucei was sequenced on an Illumina HiSeq 2000 sequencer. The Illumina data were aligned against the T.brucei TREU927 reference genome and variants were called using SAMtools v0.1.19 and BCF tools. The files are in variant call format listing all 190064 genomic positions at which any one of the six drug-resistant and the parental parasite lines had a variant call.

Visual programming for structural assessment of out-of-plane mechanisms in historic masonry structures

Marco Francesco Funari & Saverio Spadea
A visual script created during the work for the paper ‘Visual programming for structural assessment of out-of-plane mechanisms in historic masonry structures’, published by Funari, Spadea et al. (2020) in the Journal of Building Engineering. A support guide document to approach the visual scripting for structural assessment of historic masonry structures. The guide shows the practical aspects of the methods theoretically developed in the paper. The dataset of a benchmark case study suitable to test...

Supporting data for “A Systematic Study of the In Vitro Pharmacokinetics and Estimated Human In Vivo Clearance of Indole and Indazole-3-Carboxamide Synthetic Cannabinoid Receptor Agonists Detected on the Illicit Drug Market”

Andrew Brandon, Craig McKenzie, Lysbeth Antonides & Kevin Read
This dataset comprises supporting information for the peer-reviewed manuscript: A Systematic Study of the In Vitro Pharmacokinetics and Estimated Human In Vivo Clearance of Indole and Indazole-3-Carboxamide Synthetic Cannabinoid Receptor Agonists Detected on the Illicit Drug Market published in the journal ‘Molecules’.

Adverse positioning in mammography - observations of imaging features

Patsy Whelehan
This dataset consists of observations of mammographic images, plus three relevant variables used in the validation process for the measure of adverse positioning we developed based on the dataset. An expert observer generated the primary data by reviewing mammographic images to judge the presence or absence of a set of features developed through theory and consultation with other experts. The data can be reused by anyone wishing to learn and practice psychometric validation techniques, for...

High performance SERS platforms via parametric optimization of laser-assisted photodeposition of silver and gold nanoparticles

Manuel Hoffmann, Stefan Wackerow, Amin Abdolvand & Svetlana Zolotovskaya
Parametric optimization of laser-assisted photocatalytic growth of Ag and Au nanoparticles for high SERS enhancement factor performance informed by design of experiment is demonstrated. The photodeposition process was divided into two phases – seeding and growth – in order to achieve the highest possible nanoparticle surface coverage for the size range from 10 to 100 nm. Substantial difference in the parameter effects between the Ag and Au seeding and growth was found. SERS performance of...

Centrifuge dataset for screw pile installation and uplift

Benjamin Cerfontaine
The dataset describes the installation and uplift loading of a screw piles in a sand bed prepared by dry pluviation. The full details of the procedure can be found in the related paper. The different phases of each test are described in Figure 1. The data sampling rate is equal to 10ms. 1. The centrifuge is spun up to the final g-level (50g at mid-depth of the pile). 2. A period of rest (few minutes)....

QMB Morning Dataset

Tamas Suveges
The proliferation of wearable cameras has accelerated and facilitated a surge in research on analysis of egocentric videos. This relatively new field has relatively few research datasets. A significant share of publicly available egocentric datasets is purposely acquired for activity recognition, video summarization, object detection, and behavioural understanding. Here we share our dataset that is focused on personal localization and mapping. We collected our dataset on the university campus, documenting a user’s typical morning. The...

Air Pistol Pellet Dataset

Hamzah & Nic Daeid
Projectiles from a newly purchased air pistol with 0.177 calibre pellets (unjacketed) were fired a series of pellets and were examined using an optical microscope.

Time Series of Media Implied Economic Sentiments (Dictionary)

Dooruj Rambaccussing & Andrzej Kwiatkowski
These are monthly time series of media implied economic sentiments based on economic policy coverage in the main Broadsheet Newspapers in United Kingom. The time series was derived using unsupervised Machine learning where assignment of sentiment scores was achieved using the Loughran-MacDonald Dictionary for assignment of positive and negative scores.

Using a same-different matching task to determine the viability of parallel lexical processing: Measuring reaction time and error rates.

Laura J Wakeford & Wayne S Murray
Reaction time and error rate means for each experimental condition averaged over the set of items within the condition (for the by-subjects analysis) and over the subjects tested on that condition (for the by-items analysis). The initial sheet of this Excel document provides instruction on how to read and interpret the layout of the following sheets.

A CPT approach to cable plough performance prediction based upon centrifuge model testing - Measured Data

Scott Robinson, Michael Brown, Hidetake Matsui, Andrew Brennan, Charles Augarde, William Coombs & Michael Cortis
This dataset contains the measured data from the tests presented in the corresponding publication: 'Robinson, S., Brown, M., Matsui, H., Brennan, A., Augarde, C., Coombs, W. M., & Cortis, M. (2020). A CPT approach to cable plough performance prediction based upon centrifuge model testing. Canadian Geotechnical Journal. https://doi.org/10.1139/cgj-2020-0366'. The paper can also be accessed at: https://discovery.dundee.ac.uk/en/publications/a-cpt-approach-to-cable-plough-performance-prediction-based-upon- The attached spreadsheet contains the measured Horizontal Displacement, Vertical Displacement, Tow Force and Plough Depth from each of the...

Models of Antenatal Care: a pilot study to explore a new quality care framework

Symon
Systematic reviews (e.g. Sandall et al. 2015) have demonstrated a link between midwifery-led continuity of care models and improved Clinical, Psychosocial and Organisational (CPO) outcomes, including preterm birth and breastfeeding rates. However, the underlying causal mechanisms within these models are not understood, and trial reports rarely detail all the relevant contextual factors for the intervention and control groups. This pilot study will test the use of focus groups with service users and providers across NHS...

Figures in support of 27.5 W/m2 collection efficiency solar laser using a diffuse scattering cooling liquid

Smyth
This is the recorded data corresponding to the graphs provided in the published paper “27.5 W/m2 collection efficiency solar laser using a diffuse scattering cooling liquid”. Figure 2A: The absorption as a function of ray incident angle for 98% and 0% diffuse reflectivity. Figure 2B: Modelled solar absorption in Nd:YAG rod as a function of reflectivity of diffuse scatterer in contact with the side wall of the rod. Figure 4: Modelled laser output power as...

Chemical composition of different sources of petrol

Nic Daeid & Mat-Desa
Petrol samples were collected directly from nine different public fuelling stations in Glasgow, Scotland. Samples of 10, 25, 50, 75, 90, and 95% evaporated product were prepared, resulting in 63 samples in total which were analyzed using gas chromatography–mass spectrometry.

Root reinforcement: continuum framework for constitutive modelling – Data repository

Gerrit Meijer, David Muir Wood, Jonathan Knappett, Glyn Bengough & Teng Liang
This dataset contains all data underlying the work presented in the linked Geotechnique journal publication. It contains the result of all experimental work described, as well as all numerical code (mixture of MATLAB, Python and R code) and numerical predictions for all computational models described.

Udgård 2021 Raw Dataset

Vincenzo Rinaldi, Niamh NicDaeid, Sean Yu, Benny Thomsen & Eva Ljungkvist
The Leverhulme Research Centre for forensic science (LRCFS) at the University of Dundee has had several ongoing projects (collectively known by the project name Bruin) in the area of digital documentation of simulated crime scenes, particularly focusing on the 'art of the possible' using Virtual Reality as technology tools for facilitating this. LRCFS and NKC always welcome collaborations and look forward to positive discussions on how we can work together in partnership in this emerging...

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