This app segments tracts using pairs of (potentially multiple) rois from an input directory to output a set of tracts.

This app segments tracts using pairs of (potentially multiple) specified rois from an roi directory to output a set of tracts.

This service creates 4 figures of each AFQ tract: axial, left sagittal, right sagittal, coronal. Please choose the t1 image slices you would like displayed. The default slices work well for the HCP t1 images if they have not been re-ACPC aligned. If you have ACPC aligned your t1 images using the ACPC alignment app on Brain Life the following values are a good starting point: coronal = 105, sagittal = 89, axial = 65....

Runs freesurfer/mri_deface with talairach_mixed_with_skull.gca and face.gca

This App creates a large set of candidate streamlines using an ensemble of algorithms and parameter values. All outputs will be then combined into a single track.tck output.

copy of ensemble tracking that runs from the master branch for testing new changes

To monitor app-stage

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Convert a white matter classification (wmc) structure to a tractogram as a single trk file

Classifies streamlines into known anatomical tracts.

repeat of fixed parameters for OHBM 2019 submission

Convert a tractogram in tck format to a trk format file in T1 space

fmriprep outputs to connectivity matrices

White matter bundle segmentation as multiple Linear Assignment Problems (multi-LAP).

White matter bundle segmentation as multiple Linear Assignment Problems (multi-LAP). It also performs Nearest Neighbor (NN, or multi-NN) segmentation for comparison. WARNING: This App was used specifically for a Reproducibility Study and has been deprecated.

Compute the degree of overlap between two bundle masks using the Dice Similarity Coefficient (DSC) score.

Runs Gen_niftis_remove_tracts

This App creates a large set of candidate streamlines using an ensemble of algorithms and parameter values. All outputs will be then combined into a single track.tck output.

Application to calculate the Laplace Beltrami Spectrum and Eigenvectors using Matlab.

Generates specified ROIS (in nifti format) from an input atlas.

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Concatenates one or more diffusion images.

Create mid-axial, sagittal, and coronal slice png of T1 image with DWI outline overlayed

This app will map volumated measure files (i.e. tensor, NODDI) to the cortical surface following Fukutomi et al (2018; 10.1016/j.neuroimage.2018.02.017) using Connectome Workbench.

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