295 Works

Data associated with manuscript \"Predicting wave-induced sediment resuspension at the perimeter of lakes using a steady-state spectral wave model\"

Derek Roberts, S. Geoffrey Schladow, Simon Hook, Shohei Watanabe & Patricio Moreno-Casas
This repository includes data associated with the manuscript, "Predicting wave-induced sediment resuspension at the perimeter of lakes using a steady-state spectral wave model," currently in press at Water Resources Research as of January 2019. Following American Geophysical Union standards, this repository serves to publically share all data associated with the manuscript. Plain lanuage summary of the manuscript: A tool that describes lake-wide wave conditions as a function of combinations of wind speeds and directions is...

Plant morphology and behavior of Simmondsia chinensis in the Colorado Desert

Sarah Eskander, Kayla M. Kettmann, Jeramy Ott & Sarah Payne
At the edges of its range in the Colorado Desert, jojoba (Simmondsia chinensis) has been known to exhibit local morphological adaptations not found elsewhere in its distribution. In this study, we expand upon jojoba’s known sexually dimorphic adaptations and examine its behavioral adaptations to a xeric environment. Specifically, we investigate how jojoba avoids intense solar radiation through leaf orientation. We found that jojoba does not exhibit paraheliotropic leaf tracking but instead orients its leaves to...

Competition between exotic honey bees (Apis mellifera) and native pollinators on late-blooming desert scrub

Janelle M. Osteen, Alexis M. Necarsulmer, Jessica J. Fan Brown & Nhung H. Nguyen
Pollinators are essential to worldwide biodiversity. This study focuses on pollinator communities on Isocoma acradenia, a late blooming shrub in the Colorado desert. We hypothesize that late in the flowering season, exotic honey bees and native pollinators experience increased competition for floral resources. We surveyed pollinator species richness, abundance, and competitive interactions. Our results reveal that honey bee presence does not have effects, competitive or otherwise, on native pollinators. Continuing to research exotic and native...

Seed preference in a desert harvester ant, Messor pergandei

Tonia Brito-Bersi, Emily Dawes, Richard Martinez & Alexander McDonald
Optimal foraging theory states that foragers maximize their energy intake by minimizing the energy expended to collect their food. The harvester ant, Messor pergandei, provides a model system to study foraging energy expenditure due to their dependable group foraging behavior. Exploring seed preference could give us further insight into how their harvesting affects the surrounding vegetation and ecosystem as a whole. Choice trials were conducted on M. pergandei using three native seeds and one non-native...

Signatures of Environmental Adaptation During Range Expansion of Wild Common Bean (Phaseolus vulgaris)

Paul Gepts
Landscape genomics integrates population genetics with landscape ecology, allowing the identification of putative molecular determinants involved in environmental adaptation across the natural geographic and ecological range of populations. Wild Phaseolus vulgaris, the progenitor of common bean (P. vulgaris), has a remarkably extended distribution over 10,000 km from northern Mexico to northwestern Argentina. Earlier research has shown that this distribution represents a range expansion from Mesoamerica to the southern Andes through several discrete migration events and...

Penn World Table 9.1

Robert Inklaar Robert C. Feenstra

Bacteria isolated from bengal cat (Felis catus × Prionailurus bengalensis) anal sac secretions produce volatile compounds associated with animal signaling

Mei Yamaguchi, Guillaume Jospin, Holly Ganz, David Coil, Jonathan Eisen, Adrienne Cho, Thant Zaw, Mitchell McCartney & Cristina Davis
Anal sacs are an important odor producing organ found across the mammalian Order Carnivora. Secretions from the anal sac may be used as chemical signals by animals for behaviors ranging from defense to species recognition to signaling reproductive status. In addition, a recent study suggests that domestic cats utilize short-chain free fatty acids in anal sac secretions for individual recognition. The fermentation hypothesis is the idea that symbiotic microorganisms living in association with animals contribute...

Bark characteristics affect epiphytic bryophyte cover across tree species

Devan Becker, Alistair Dobson & Kristen Klitgaard
Forest tree communities are shifting as a result of changes in regional climate and human management, which has cascading effects on other members of the community such as epiphytic bryophytes. Epiphytic bryophytes play important roles in ecosystem function, and their distribution is highly dependent on the characteristics of their substrate. To see how epiphytic substrate characteristics affect bryophyte abundance, we measured bark thickness, pH, and water holding capacity as it varied with bryophyte coverage on...

Measurements from the Fire Influence on Regional and Global Environments Experiment (FIREX) Fire Lab Mini Chamber Experiment

Christopher Cappa, Christopher Lim, David Hagan & Jesse Kroll
All experiments were conducted during the Fire Influence on Regional to Global Environments Experiment (FIREX) lab study, which took place at the Missoula Fire Sciences Lab in Missoula, MT, USA during November, 2016. Experiments focused on refining our understanding of emissions and short timescale processing. The focus was on measuring fuels or combustion conditions that are characteristic of the western U.S. that may be under-sampled by the fire research community. Numerous types of biomass were...

Impacts of fire suppression and drought stress on patterns of conifer mortality in eastern Sierra Nevada montane forest

Josh Brandt, John Laux, & Benjamin Weaver
In the age of fire suppression, a major killer of coniferous forests has shifted from wildfires to beetle infestations and drought stress. We examined a conifer forest in the Eastern Sierra Nevada to obtain demographic data on the area and to determine the factors affecting conifer mortality. We found a positive relationship between the number of boreholes and mortality across tree species. Bark beetle tree mortality in lodgepole pine (Pinus contorta) was related to density,...

Herbivory defense and growth tradeoffs along a moisture gradient in Lupinus latifolius var. columbianus

Lilly Boiton, James Powers & Jordan Waits
Hypotheses such as the plant stress hypothesis, apparency theory, and the resource availability hypothesis provide contrasting predictions to how plants respond to abiotic stress and their interactions with herbivores. In this paper we examined the effects of a water availability gradient on the morphological characteristics and herbivory of Lupinus latifolius var. columbianus. We measured the abundance of the leaf beetle, Galeruca rudis, and Aphididae as well as the amount of leaf herbivory damage on lupine...

Data from: Evolution of sexually dimorphic pheromone profiles coincides with increased number of male-specific chemosensory organs in Drosophila prolongata

Yige Luo, Yuewei Zhang, Jean-Pierre Farine, Jean-François Ferveur, Santiago Ramírez & Artyom Kopp
Binary communication systems that involve sex-specific signaling and sex-specific signal perception play a key role in sexual selection and in the evolution of sexually dimorphic traits. The driving forces and genetic changes underlying such traits can be investigated in systems where sex-specific signaling and perception have emerged recently and show evidence of potential coevolution. A promising model is found in Drosophila prolongata, which exhibits a species-specific increase in the number of male chemosensory bristles. We...

One-dimensional models of radiation transfer in heterogeneous canopies: a review, re-evaluation, and improved model

Brian Bailey, María Ponce De León & E. Scott Krayenhoff
This dataset contains the project files and data output for the publication: Bailey, Brian; Ponce de León, María; Krayenhoff, E. Scott (2019), One-dimensional models of radiation transfer in heterogeneous canopies: A review, re-evaluation, and improved model. The file main.cpp contains the main program that sets up and runs the simulations. Output files are stored in the 'output' directory. The current version of the Helios source code can be downloaded at https://www.github.com/PlantSimulationLab/Helios

Data from: Anthropogenic Basin Closure and Groundwater Salinization (ABCSAL)

Richard Pauloo
Global food systems rely on irrigated agriculture, and most of these systems in turn depend on fresh sources of groundwater. In this study, we demonstrate that groundwater development, even without overdraft, can transform a fresh, open basin into an evaporation dominated, closed-basin system, such that most of the groundwater, rather than exiting via stream baseflow and lateral subsurface flow, exits predominantly by evapotranspiration from irrigated lands. In these newly closed hydrologic basins, just as in...

Genome Synteny Has Been Conserved Among the Octoploid Progenitors of Cultivated Strawberry Over Millions of Years of Evolution

Michael Hardigan, Mitchell Feldmann, Anne Lorant, Kevin Bird, Steven Knapp, Patrick Edger, Glenn Cole, Charlotte Acharya & Randi Famula
Allo-octoploid cultivated strawberry (Fragaria × ananassa) originated through a combination of polyploid and homoploid hybridization, domestication of an interspecific hybrid lineage, and continued admixture of wild species over the last 300 years. While genes appear to flow freely between the octoploid progenitors, the genome structures and diversity of the octoploid species remain poorly understood. The complexity and absence of an octoploid genome frustrated early efforts to study chromosome evolution, resolve subgenomic structure, and develop a...

Exploring the role of attitude in the acceptance of self-driving shuttles

YAN XING, Susan Handy, Giovanni Circella, Yunshi Wang & Farzad Alemi
Self-driving vehicles, as a revolution in mobility, are emerging and developing rapidly. However, public attitudes toward this new unproven technology are still uncertain. Given the significant influence of attitude toward a new technology on the intention to use it, the question arises as to why some people are in favor of this technology whereas others are not. Additionally, questions about the key attitudes influencing self-driving technology acceptance, where these attitudes come from, and how they...

Effect of stressors on the carrying capacity of spatially distributed metapopulations

Bo Zhang, Donald DeAngelis, Wei-Ming Ni, Yuanshi Wang, Lu Zhai, Alex Kula, Shuang Xu & David Van Dyken
Stressors such as antibiotics, herbicides and pollutants are becoming increasingly common in the environment. The effects of stressors on populations are typically studied in homogeneous, non-spatial settings. However, most populations in nature are spatially distributed over environmentally heterogeneous landscapes with spatially-restricted dispersal. Little is known about the effects of stressors in these more realistic settings. Here, we combine laboratory experiments with novel mathematical theory to rigorously investigate how a stressor’s physiological effect and spatial distribution...

Understanding Behavioral Responses of Wildlife to Traffic to Improve Mitigation Planning

Fraser Shilling
Creating and maintaining sustainable transportation systems depends in part on understanding and mitigating ecological impacts. Wildlife crossing structures (WCS) are often used to mitigate impacts on wildlife populations. WCS and existing structures may provide passage for multiple species, depending on their sensitivity to traffic disturbance and perception of the roadway. In a previous project, we found that traffic conditions and traffic noise could reduce WCS effectiveness in facilitating passage of diverse and sensitive species. In...

Correlated evolution of sex allocation and mating system in wrasses and parrotfishes

Jennifer Hodge, Francesco Santini & Peter Wainwright
In accordance with predictions of the size-advantage model, comparative evidence confirms that protogynous sex change is lost when mating behavior is characterized by weak size advantage. However, we lack comparative evidence supporting the adaptive significance of sex change. Specifically, it remains unclear whether increasing male size advantage induces transitions to protogynous sex change across species, as it can within species. We show that in wrasses and parrotfishes (Labridae), the evolution of protogynous sex change is...

Channel types predictions for the Sacramento River basin

Hervé Guillon, Colin F. Byrne, Belize Arela Albin Lane, Samuel Sandoval Solis & Gregory Brian Pasternack
Hydrologic and geomorphic classifications have gained traction in response to the increasing need for basin-wide water resources management. Regardless of the selected classification scheme, an open scientific challenge is how to extend information from limited field sites to classify tens of thousands to millions of channel reaches across a basin. To address this spatial scaling challenge, we leveraged machine learning to predict reach-scale geomorphic channel types using publicly available geospatial data.

Root and shoot variation in relation to potential intermittent drought adaptation of Mesoamerican wild common bean (Phaseolus vulgaris L.)

Paul Gepts, Jorge Carlos Berny Mier Y Teran, Enéas R Konzen, Viviana Medina, Antonia Palkovic, Andrea Ariani, Siu M. Tsai & Matthew E. Gilbert
• Background Wild crop relatives have been potentially subjected to stresses on an evolutionary time scale prior to domestication. Among these stresses, drought is one of the main factors limiting crop productivity and its impact is likely to increase under current scenarios of global climate change. We sought to determine to what extent wild common bean (Phaseolus vulgaris) exhibited adaptation to drought stress, whether this potential adaptation is dependent on the climatic conditions of the...

Data from: Fostering the use of zero and near zero emission vehicles in freight operations

Miguel Jaller, Leticia Pineda, Yasar Gueldas, Farzad Alemi & Irem Otay
California has put forward a number of goals to improve freight efficiency through the introduction and use of zero and near-zero emission vehicles. However, the technical and operational characteristics, market readiness, and other factors related to these technologies can be very different. Therefore, the most appropriate option for different uses (e.g., last mile, long-haul distribution) and users’ preferences is not necessarily clear. This study focused on analyzing the factors to foster the adoption of zero...

Integrated Crop-Livestock Systems achieve comparable crop yields to specialized systems: a meta-analysis

Caitlin Peterson, Leonardo Deiss & Amelie Gaudin
Production systems that feature temporal and spatial integration of crop and livestock enterprises, also known as integrated crop-livestock systems (ICLS), have the potential to intensify production on cultivated lands and foster resilience to the effects of climate change without proportional increases in environmental impacts. Yet, crop production outcomes following livestock grazing across environments and management scenarios remain uncertain and a potential barrier to adoption, as producers worry about the effects of livestock activity on the...

Data from: Forests do not limit bumble bee foraging movements in a montane meadow complex

John Mola, Michael Miller, Sean O'Rourke & Neal Williams
Understanding the roles of habitat fragmentation and resource availability in shaping animal movement are integral for promoting species persistence and conservation. For insects like bumble bees, their movement patterns affect the survival and reproductive potential of their colonies as well as the pollen flow of plant species. However, our understanding of their mobility or the impact of putative barriers in natural environments is limited due to the technical difficulties of studying wild populations. We used...

Data from: Measuring behavior patterns and evaluating time sampling methodology to characterize brush use in weaned beef cattle

Kelsey Horvath, Rachel Toaff-Rosenstein, Cassandra Tucker & Emily Miller-Cushon
With growing interest in provision of brushes to cattle, and implications of brush use for behavioral development and welfare, there is a need to validate methodology for quantifying grooming behavior. Our objectives were to characterize patterns of brush use, including bouts, diurnal activity, and individual variability over 24-h periods and to validate time sampling methodologies to characterize these traits, including instantaneous recording at various time intervals and continuous recording for subsets of the day. Data...

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  • University of California, Davis
  • University of California, Berkeley
  • United States Department of Agriculture
  • United States Geological Survey
  • University of Sao Paulo
  • University of Minnesota
  • Oak Ridge National Laboratory
  • University of Wisconsin-Madison
  • University of Miami
  • University of Florida