4,444 Works

Peer review of \"Chromosome-level genome assembly of Aldrichina grahami, a forensically important blowfly\"

Aaron Taron
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Chromosome-level genome assembly of Aldrichina grahami, a forensically important blowfly\"

Aaron Tarone
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration\"

Anil Thanki
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"An image dataset related to automated macrophage detection in immunostained lymphoma tissue samples\"

Guy M Hagen
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"*-DCC: A platform to collect, annotate, and explore a large variety of sequencing experiments\"

Christophe Trefois
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"*-DCC: A platform to collect, annotate, and explore a large variety of sequencing experiments\"

Adam Frankishl
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Chromosome-level genome assembly and annotation of the loquat (Eriobotrya japonica) genome\"

Robert Van Buren
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Interpretable and accurate prediction models for metagenomics data\"

Bonnie Hurwit
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism\"

Aureliano Bombarely
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family\"

Caroline Belser
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Genome sequence of the agarwood tree Aquilaria sinensis (Lour.) Spreng: the first chromosome-level draft genome in the Thymelaeceae family\"

Fernando Cruz
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"DeepPod: a convolutional neural network based quantification of fruit number in Arabidopsis\"

This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Comparative proteomics analysis of Tibetan hull-less barley under osmotic stress via data-independent acquisition mass spectrometry\"

This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Supporting materials from “Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication”

CW Nossa, P Havlak, JX Yue, J Lv, KY Vincent, HJ Brockmann & NH Putnam
Atlantic horseshoe crabs (Limulus polyphemus) are marine arthropods with a fossil record extending back approximately 450 million years. They exhibit remarkable morphological stability over their long evolutionary history, retaining a number of ancestral arthropod traits, and are often cited as examples of “living fossils.” We constructed a genetic linkage map of this 2.7 Gbp genome by sequencing the nuclear DNA of 34 wild-collected, full-sibling embryos and their parents at a mean redundancy of 1.1x per...

Genomic data of the Chinese tree shrew (Tupaia chinensis)

Y Fan, Z Huang, C Cao, C Chen, Y Chen, D Fan, J He, H Hou, L Hu, X Hu, X Jiang, R Lai, Y Lang, B Liang, S Liao, D Mu, Y Ma, Y Niu, X Sun, J Xia, J Xiao, Z Xiong, L Xu, L Yang, Y Zhang … & G Zhang
Chinese tree shrews (Tupaia belangeri chinensis) possess many features valuable in animals used as experimental models in biomedical research. Currently, there are numerous attempts to employ tree shrews as models for a variety of human disorders: depression, myopia, hepatitis B and C virus infections, and hepatocellular carcinoma, to name a few. Here we present a publicly available annotated genome sequence for the Chinese tree shrew. Phylogenomic analysis of the tree shrew and other mammalians highly...

Genomic data of the Bald Eagle (Haliaeetus leucocephalus)

W Warren, ED Jarvis, RK Wilson, JT Howard, MTP Gilbert, G Zhang & The Avian Genome Consortium
The Bald Eagle (Haliaeetus leucocephalus(Linnaeus, 1766)) is the official emblem of the United States and it belongs to a group of birds known as fish eagles. They are a large bird with adults weighing upto 4kg.These data have been produced as part of the Avian Phylogenomic Project . DNA was collected from a male bird bred at the NC Raptor Center, Huntersville, North Carolina, USA. The sequencing was conducted at WUSTL. We sequenced the 1.4Gb...

Genomic data of the Great black cormorant (Phalacrocorax carbo)

G Zhang, B Li, C Li, MTP Gilbert, E Jarvis, The Avian Genome Consortium & J. Wang
The Great Cormorant (Phalacrocorax carbo) is a widespread member of the cormorant family and is known by several different names around the world - the Black Shag in New Zealand, the Black Cormorant in Australia and the Large Cormorant in India. It is a large black bird that can be distinguished from the Common Shag by its larger size, heavier build and thicker bill. They are mostly silent birds but can produce various guttural noises...

Genomic data of the Great-crested grebe (Podiceps cristatus)

G Zhang, B Li, C Li, MTP Gilbert, E Jarvis, The Avian Genome Consortium & J. Wang
The Great Crested Grebe (Podiceps cristatus) is known for its elaborate mating display and is the largest member of the Grebe family in the Old World. In the 19th century, the species was almost hunted to extinction in the UK for its head plumes, which were used to decorate hats and other female attire.These data have been produced as part of the avian phylogenomic project. DNA from the Podiceps cristatus was collected in Denmark. We...

Genomic data of the Bar-tailed trogon (Apaloderma vittatum)

G Zhang, B Li, C Li, MTP Gilbert, E Jarvis, The Avian Genome Consortium & J. Wang
The Bar-tailed Trogon (Apaloderma vittatum) belongs to the Trogonidae family of birds and lives in forests at a preferred altitude of around 1600 metres, and who's vocalisations are described "a yelping crescendo". It is found in several African countries - Angola, Burundi, Cameroon, Democratic Republic of the Congo, Equatorial Guinea, and Kenya, to name a few. These data have been produced as part of the avian phylogenomic project. DNA from the Apaloderma vittatum was collected...

Genomic data of the Javan rhinoceros hornbill (Buceros rhinoceros silvestris)

G Zhang, B Li, C Li, MTP Gilbert, E Jarvis, The Avian Genome Consortium & J. Wang
The Javan rhinoceros hornbill (Buceros rhinoceros silvestris ) is a sub species of the Rhinoceros Hornbill (Buceros rhinoceros), one of the world's largest hornbills that has lived in captivity for over 90 years. It is found it lowland and tropical and sub-tropical mountain rainforests in Borneo, Sumatra, Java, the Malay Peninsula, Singapore and southern Thailand. It is also the state bird of the Malaysian state, Sarawak. These data have been produced as part of the...

Genomic data of the Red-legged seriema (Cariama cristata)

G Zhang, B Li, C Li, MTP Gilbert, E Jarvis, The Avian Genome Consortium & J. Wang
The Red-legged Seriema (Cariama cristata) is a predatory terrestial bird in the Cariamidae family. It is also known as the Crested Cariama. It is found in the grasslands of Brasil, south of the Amazon to Uruguay and northern Argentina. The Red-legged Seriema has a song described to sound like a cross between a bark of a young dog and a clucking of turkeys. These data have been produced as part of the avian phylogenomic project....

Genomic data of the Northern Fulmar (Fulmarus glacialis)

G Zhang, B Li, C Li, MTP Gilbert, E Jarvis, The Avian Genome Consortium & J. Wang
The Northern Fulmar (Fulmarus glacialis), also known as Fulmar or Arctic Fulmar, is a highly abundant sea bird and commonly found in north Pacific and north Atlantic subarctic regions. It is a member of the Procellariidae family, which include petrels and shearwaters, and like other petrels, the Northern Fulmar's walking ability is limited but is a very a strong flier. These data have been produced as part of the avian phylogenomic project. DNA from the...

Genomic data of the Chimney swift (Chaetura pelagica)

G Zhang, B Li, C Li, MTP Gilbert, E Jarvis, The Avian Genome Consortium & J. Wang
The Chimney Swift (Chaetura pelagica) is a bird belonging to the swift family Apodidae. It is closely related to both the Vaux's Swift and the Chapman's Swift. The Chimney swift is often described as a sociable species, seldom seen alone and only rarely seen at rest. These data have been produced as part of the avian phylogenomic project. DNA from the Chaetura pelagica was collected in USA, Louisiana. We sequenced the genome to a depth...

Genomic data of the Rifleman (Acanthisitta chloris)

G Zhang, B Li, C Li, MTP Gilbert, E Jarvis, The Avian Genome Consortium & J. Wang
The Rifleman (Acanthisitta chloris) is an endemic bird to New Zealand and is also known as Tītipounamu in Maori. It belongs to the Acanthisittidae family, also known as New Zealand wrens, and is one of two surviving species. The Rifleman is named after a colonial New Zealand regiment because its plumage is similar to the military uniform of a rifleman.These data have been produced as part of the avian phylogenomic project. DNA from the Acanthisitta...

Supporting material for \"Galaxy-M: A galaxy workflow for processing and analysing direct infusion and liquid chromatography mass spectrometry-based metabolomics data\"

Robert L Davidson, Ralf JM Weber, Archana Sharma-Oates, & Mark R Viant
Metabolomics is increasingly recognised as an invaluable tool in the biological, medical and environmental sciences yet lags behind the methodological maturity of other ‘omics fields, specifically genomics and transcriptomics. To achieve its full potential, including the integration of multiple ‘omics modalities, the accessibility, standardisation and reproducibility of computational metabolomics tools must to be improved significantly. Here we present an end-to-end metabolomics analysis pipeline that has been developed for both direct infusion mass spectrometry (DIMS) and...

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