4,275 Works

Peer review of \"drVM: a new tool for efficient genome assembly of known eukaryotic viruses from metagenomes\"

Kristoffer Forslund
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"drVM: a new tool for efficient genome assembly of known eukaryotic viruses from metagenomes\"

Simon Roux
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Multilayer modeling and analysis of human brain networks\"

Richard Betzel
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Multilayer modeling and analysis of human brain networks\"

This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Orthogonal decomposition of left ventricular remodelling in myocardial infarction\"

Kristin McLeod
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Genome sequencing of the winged midge, Parochlus steinenii, from the Antarctic Peninsula\"

Monica Poelchau
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Stepwise Distributed Open Innovation Contests for Software Development - Acceleration of Genome-Wide Association Analysis\"

Nick Lynch
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Stepwise Distributed Open Innovation Contests for Software Development - Acceleration of Genome-Wide Association Analysis\"

Chris Chang
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"RED-ML: a novel, effective RNA editing detection method based on machine learning\"

Anton Feenstra
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae\"

Mathew Jenny
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Science In the Cloud (SIC): A use case in MRI Connectomics\"

Peter Li
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

An updated reference human genome dataset of the BGISEQ-500 sequencer

Jie Huang, , , , , , , , , Ting Yu, Nan Sun, Hui Jiang, Xin Liu, , Feng Mu &
The BGISEQ-500 is a new desktop sequencer developed by BGI. Using DNA nanoballs (DNB) and combinational probe-anchor synthesis (cPAS) developed from Complete Genomics™ sequencing technology, it generates short reads at a large scale, which can help fulfill the growing demands for sequencing. Here, we present the first human whole genome sequencing dataset from the BGISEQ-500. The dataset was generated by sequencing the widely-used Genome in a Bottle Consortium cell line, HG001 (NA12878). We have previously...

Supporting data for \"PSSMHCpan: a novel PSSM based software for predicting class I peptide-HLA binding affinity\"

Geng Liu, , Zhang Li, Si Qiu, , , , , Zhen Cheng, Xin Song, Le Cheng, , Jian Wang, Huanming Yang, Kun Ma, Yong Hou & Bo Li
Predicting peptides binding affinity with human leukocyte antigen (HLA) is a crucial step in developing powerful antitumor vaccine for cancer immunotherapy. Currently available methods work quite well in predicting peptide binding affinity with HLA alleles such as HLA-A*0201, HLA-A*0101, and HLA-B*0702 in terms of sensitivity and specificity. However, quite a few types of HLA alleles that are present in majority of human populations including HLA-A*0202, HLA-A*0203, HLA-A*6802, HLA-B*5101, HLA-B*5301, HLA-B*5401 and HLA-B*5701 still cannot be...

Supporting data for \"Phenobook: An open source software for phenotypic data collection\"

Juan M Crescente, Fabio Guidobaldi, Melina Demichelis, Maria B Formica, Marcelo Helguera & Leonardo S Vanzetti
We have developed a novel, open source software called Phenobook, an easy, flexible and intuitive tool to organize, collect and save experimental data for further analyses. Phenobook was conceived to collect phenotypic observations in a user-friendly, cost-effective way. It consists of a web-based software for experiment design, data input and visualization, and exportation, combined with a mobile application for remote data collecting. We provide in this article a detailed description of the developed tool. Phenobook...

Supporting data for the draft genome of the Northern snakehead, Channa argus

Jian Xu, Chao Bian, , , , Qing Luo, , , Jia Li, Yu Huang, , , Hua Deng, , , Qiong Shi & Peng Xu
The Northern snakehead (Channa argus), a member of Channidae family in Perciformes, is an economically important freshwater fish with its main distributions in Asian and African countries. In North America, it has become notorious as an intentionally released invasive species. Its ability to breathe air with gills and migrate short distances over land makes it a good model for bimodal breath research. Therefore, recent researches have been focused on the identification of relevant candidate genes....

Supporting data for \"Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae\"

, , Young-Ok Kim, , Hee Jeong Kong, , , Jung Youn Park, Cheul Min An, Ji-Young Moon, , Jae Woong Yu, Joon Yoon, , , Duk Kyung Kim, , , Chul Lee, , , , , , Kelsey Caetano-Anolles … &
Abalones are large marine snails in the family Haliotidae and the genus Haliotis belonging to the class Gastropoda of the phylum Mollusca. The family Haliotidae contains only one genus, Haliotis, and this single genus is known to contain several species of abalone. With 18 additional subspecies, the most comprehensive treatment of Haliotidae considers 56 species valid. Abalone is an economically important fishery and aquaculture animal which is considered a highly-prized seafood delicacy. The total global...

Peer review of \"Phenobook: An open source software for phenotypic data collection\"

Noah Fahlgren
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Whole genome sequencing of Chinese clearhead icefish, Protosalanx hyalocranius\"

Christiaan Henkel
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \" The genome sequence of the wisent (Bison bonasus) \"

Derek Bickhart
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Genome sequencing of the sweetpotato whitefly Bemsia tabaci MED/Q\"

Denis Tagu
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"PSSMHCpan: a novel PSSM based software for predicting class I peptide-HLA binding affinity\"

Sebastian Maurer-Stroh
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"PSSMHCpan: a novel PSSM based software for predicting class I peptide-HLA binding affinity\"

Sebastian Maurer-Stroh
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"PSSMHCpan: a novel PSSM based software for predicting class I peptide-HLA binding affinity\"

This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"NanoSim: nanopore sequence read simulator based on statistical characterization\"

Sara Goodwin
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of \"Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics\"

Abdul Baten
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

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