396 Works

Peer review of "Live time-lapse dataset of in vitro wound healing experiments"

Juliane Zimmermann
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists"

Rayan Chikhi
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???Research prioritization through prediction of future impact on biomedical science: a position paper on inference-analytics".

Matthias Erwin Futschik
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???Galaxy tools to study genome diversity".

Warren Edward Johnson
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education".

Sumio Sugano
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???Free breathing myocardial perfusion data sets for performance analysis of motion compensation algorithms".

Andrew Cookson
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing"

Iraida Amaya
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant".

Sebastien Boisvert
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of “Non-targeted metabolomics and lipidomics LC–MS data from maternal plasma of 180 healthy pregnant women".

Ralf Weber
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???Event-related potential datasets based on a three-stimulus paradigm".

Yasser M Kadah
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Supporting materials for "SOAPdenovo2 Case Study".

Alejandra Gonzalez-Beltran, Peter Li, Jun Zhao, Mark Thompson, Maria Susana Avila-Garcia, Ruibang Luo, Tak-Wah Lam, Tin-Lap Lee, Marco Roos, Scott Edmunds, Susanna-Assunta Sansone & Philippe Rocca-Serra
The SOAPdenovo2 case study is a reproducibility study aimed at exploring how existing research objects and workflow enactment engines can help assess, record and preserve scientific workflows and associated findings by reviewing a comparison between sequence assembly algorithm performance in the light of development of the SOAPdenovo2 de novo genome assembler. The case study was a joint effort by the GigaScience journal, the Investigation/Study/Assay (ISA) infrastructure, Nanopublication (Nanopub) and Research Object (RO) communities and SOAPdenovo2...

Peer Review of ???miRNA Temporal Analyzer (mirnaTA): a bioinformatics tool for identifying differentially expressed microRNAs in temporal studies using normal quantile transformation".

Malik Yousef
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???Standardizing metadata and taxonomic identification in metabarcoding studies".

Pierre Taberlet
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Enhanced reproducibility of SADI web service workflows with Galaxy and Docker"

Dannon Baker
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???Annotated features of domestic cat ???????? Felis catus genome".

Frederica DiPalma
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Supporting materials and software for "GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists"

Lauris Kaplinski, Maarja Lepamets & Maido Remm
K-mer-based methods of genome analysis have attracted great interest because they do not require genome assembly and can be performed directly on sequencing reads. Many analysis tasks require one to compare k-mer lists from different sequences to find words that are either unique to a specific sequence or common to many sequences. However, no stand-alone k-mer analysis tool currently allows one to perform these algebraic set operations. We have developed the GenomeTester4 toolkit, which contains...

Peer Review of ???Galaxy tools to study genome diversity".

Peter Li
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer".

Choon Kiat Ong
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???Understanding how and why the Gene Ontology and its annotations evolve: the GO within UniProt".

Monica Chagoyen
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???Quantifying the use of bioresources for promoting their sharing in scientific research".

Susanna Assunta-Sansone
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???Understanding how and why the Gene Ontology and its annotations evolve: the GO within UniProt".

Monica Chagoyen
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???EMPeror: a tool for visualizing high-throughput microbial community data".

Filipa Godoy-Vitorino
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Software and supporting material for "Second-generation PLINK: rising to the challenge of larger and richer datasets".

CC Chang, CC Chow, LCAM Tellier, S Vattikuti, SM Purcell & JJ Lee
Because of its broad functionality and efficient binary file format, PLINK is widely employed in data-processing pipelines set up for gene-trait mapping and populationgenetic studies. The five years since the final first-generation update (v1.07), however, have witnessed the introduction of new algorithms and analytical approaches, the growth in size of typical datasets, and wide deployment of heavily multicore processors. In response, we have developed PLINK 1.9, a comprehensive performance, scaling, and usability update. Our data...

Peer Review of ???The rise of large-scale imaging studies in psychiatry".

Yu-Feng Zang
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer Review of ???Quantifying the use of bioresources for promoting their sharing in scientific research".

Stephanie Dyke
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Registration Year

  • 2015
    396

Resource Types

  • Text
    341
  • Dataset
    55