241 Works

Peer review of "Integrated metabolomics and phytochemical genomics approaches for studies on rice"

Ellen Zuther
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "AGOUTI: improving genome assembly and annotation using transcriptome data"

Mihaela Pertea
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Whole genome sequence analysis of BT-474 using complete Genomics’ standard and long fragment read technologies"

Jacob Kitzman
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Draft genome of the living fossil Ginkgo biloba"

Andrea Zuccolo
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Mitochondrial metagenomics: letting the genes out of the bottle"

Johan Bengtsson-Palme
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Supporting data for "Species level resolution of 16S rRNA gene amplicons sequenced through MinION portable nanopore sequencer"

Alfonso Benitez-Paez, Kevin J Portune & Yolanda Sanz
The miniaturized and portable DNA sequencer MinION has been released to the scientific community in the framework of an early access programme to evaluate its application for a wide variety of genetic approaches. This technology has demonstrated a great potential, especially in genome-wide analyses. In this study, we tested the ability of the MinION system to perform amplicon sequencing in order to design new approaches to study microbial diversity using nearly full-length 16S rDNA sequences....

Peer review of "Micro-computed tomography scan and virtual histological slide data for the land planarian Obama otavioi (Platyhelminthes)"

Sarah Faulwetter
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Genome of the ocean sunfish (Mola mola)

Hailin Pan, Hao Yu, Vydianathan Ravi, Cai Li, Alison P Lee, Michelle M Lian, Boon-Hui Tay, Jian Wang, Sydney Brenner, Huanming Yang, Guojie Zhang & Byrappa Venkatesh
The ocean sunfish (Mola mola) which can grow up to a length of 2.7 m and weigh 2.3 tons is the world’s largest bony fish. It exhibits an extremely fast growth rate and possesses an endoskeleton made up largely of cartilage. Another unique feature of the sunfish is the loss of caudal fin which is replaced by a broad and stiff lobe resulting in the characteristic truncated appearance of the fish. To get an insight...

Self-organization and brain function

Jorg P Pfannmoller, Rickson C Mesquita, Luis CT Herrera & Daniela Dentico
Self-organization is a fundamental property of complex systems, describing the order spontaneously arising by the local interactions of the system components not mediated by top-down inputs. Though, self-organizing systems typically possess a large number of components and exhibit complex dynamics, their evolution is deterministic and governed by a small number of order parameters. This property is used here to model the self-organization of the ocular dominance columns of the striate cortex in patterns of neighboring...

Supporting data for "Whole genome sequencing of Chinese clearhead icefish, Protosalanx hyalocranius"

Kai Liu, Dongpo Xu, Jia Li, Chao Bian, Jinrong Duan, Yanfeng Zhou, Minying Zhang, Xinxin You, Yang You, Jieming Chen, Hui Yu, Gangchun Xu, Di-An Fang, Jun Qiang, Shulun Jiang, Jie He, Junmin Xu, Qiong Shi, Zhiyong Zhang & Pao Xu
Chinese clearhead icefish, Protosalanx hyalocranius, is a representative icefish species with economic importance and special appearance. Due to its great economic values in China, the fish was introduced into Lake Dianchi and several other lakes from the Lake Taihu half a century ago. Similar to the Sinocyclocheilus cavefish, the clearhead icefish has certain cavefish-like traits, such as transparent body and nearly scaleless skin. Here, we provide the whole genome sequence of this surface-dwelling fish and...

Peer review of "Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets"

Philippe Rocca-Serra
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer"

Andy Kilianski
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Supporting data for "Low coverage sequencing of three echinoderm genomes: the brittle star Ophionereis fasciata, the sea star Patiriella regularis, and the sea cucumber Australostichopus mollis"

Kyle A Long, Carlos W Nossa, Mary A Sewell, Nicholas H Putnam & Joseph F Ryan
There are five major extant groups of Echinodermata: Crinoidea (feather stars and sea lillies), Ophiuroidea (brittle stars and basket stars), Asteroidea (sea stars), Echinoidea (sea urchins, sea biscuits, and sand dollars), and Holothuroidea (sea cucumbers). These animals are known for their pentaradial symmetry as adults, unique water vascular system, mutable collagenous tissues, and endoskeletons of high magnesium calcite. To our knowledge, the only echinoderm species with a genome sequence available to date is Strongylocentrotus pupuratus...

Peer review of "A picture is worth a thousand data points: an imagery dataset of paired shrub-open microsites within the Carrizo Plain National Monument"

Christopher Hunter
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "RES-Scanner: a software package for genome-wide identification of RNA-editing sites"

Ernesto Picardi
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets"

Christophe Dessimoz
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes"

Fiona Nielsen
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Genomic analyses reveal FAM84B and the NOTCH pathway are associated with the progression of esophageal squamous cell carcinoma"

Oscar M Rueda
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Simulating social-ecological systems: the Island Digital Ecosystem Avatars (IDEA) consortium"

Melody Clark
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Chromosomer: a reference-based genome arrangement tool for producing draft chromosome sequences"

Thomas Keane
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Recommendations for open data science"

B F Francis Ouellette
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Transcriptome of the Caribbean stony coral Porites astreoidesfrom three developmental stages"

Carly Kenkel
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Circadian rhythms have significant effects on leaf-to-canopy scale gas exchange under field conditions"

Daniel Seaton
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "A picture is worth a thousand data points: an imagery dataset of paired shrub-open microsites within the Carrizo Plain National Monument"

Leonardo Maffei
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Sequencing, de novo assembly and annotation of a pink bollworm larval midgut transcriptome"

Christopher Jones
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Registration Year

  • 2016
    241

Resource Types

  • Text
    156
  • Dataset
    85