687 Works

Peer review of "Whole-genome sequences of 89 Chinese sheep suggest role of RXFP2 in the development of unique horn phenotype as response to semi-feralization"

Johannes Lenstra
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "YAMP: a containerised workflow enabling reproducibility in metagenomics research"

Konstantinos Krampis
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "VaDiR: an integrated approach to Variant Detection in RNA"

Terry Speed
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry)"

Sook Jung
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Molecular modularity and asymmetry of the molluscan mantle revealed by a gene expression atlas"

Deborah Power
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "A benchmark study of k -mer counting methods for high-throughput sequencing"

Rob Patro
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Optimized distributed systems achieve significant performance improvement on sorted merging of massive VCF files"

Ivan Merelli
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "A gene catalogue of the Sprague-Dawley rat gut metagenome "

Raad Gharaibeh
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Supporting data for ‘Piggy: A Rapid, Large-Scale Pan-Genome Analysis Tool for Intergenic Regions in Bacteria’

Feil J. Edward, Thorpe A Harry, Sheppard K Samuel & Bayliss C Sion
Despite overwhelming evidence that variation in intergenic regions (IGRs) in bacteria can directly influence phenotypes, most current approaches for analysing pan-genomes focus exclusively on protein-coding sequences. To address this we present Piggy, a novel pipeline that emulates Roary except that it is based only on IGRs. We demonstrate the use of Piggy for pan-genome analyses of Staphylococcus aureus and Escherichia coli using large genome datasets. For S. aureus, we show that highly divergent (“switched”) IGRs...

Peer review of "Molecular modularity and asymmetry of the molluscan mantle revealed by a gene expression atlas"

Linlin Zhang
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Chromosome-level genome assembly of the spotted sea bass, Lateolabrax maculatus "

Hyun Park
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Hot-starting software containers for STAR aligner"

Björn Grüning
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "SILAC-based phosphoproteomics reveals new PP2A-Cdc55-regulated processes in budding yeast"

Arminja Kettenbach
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity"

Shiguo Zhou
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Differential protein expression and post-translational modifications in Metronidazole-resistant Giardia duodenalis"

Andrea Rópolo
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis) "

Araxi Urrutia
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "De novo genome assembly of the red silk cotton tree (Bombax ceiba)"

Yuxuan Yuan
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Metabolomics investigation of dietary effects on flesh quality in grass carp (Ctenopharyngodon idellus)"

Tim Young
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Supporting data for "Annotation of the Giardia proteome through structure-based homology and machine learning"

Jex R Aaron, Pope J Bernard, Ansell RE Brendan, Georgeson Peter & Emery-Corbin J Samantha
Large-scale computational prediction of protein structures represents a cost-effective alternative to empirical structure determination with particular promise for non-model organisms and neglected pathogens. Conventional sequence-based tools are insufficient to annotate the genomes of such divergent biological systems. Conversely, protein structure tolerates substantial variation in primary amino acid sequence, and is thus a robust indicator of biochemical function. Structural proteomics is poised to become a standard part of pathogen genomics research, however informatic methods are now...

Peer review of "Chromosome-level genome assembly of the spotted sea bass, Lateolabrax maculatus "

László Orban
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Snake fangs: 3D morphological and mechanical analysis by microCT, simulation and physical compression testing"

Ed Stanley
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees"

Kristoffer Forslund
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "The draft genome sequence of forest musk deer (Moschus berezovskii)"

Sylvain Foissac
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Population genomics of wild Chinese rhesus macaques reveals a dynamic demographic history and local adaptation, with implications for biomedical research"

Alexander Nater
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "An open-source high-speed infrared videography database to study the principles of active sensing in freely navigating rodents"

Orlando Guntinas-Lichuis
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Registration Year

  • 2018
    687

Resource Types

  • Text
    519
  • Dataset
    168