114 Works

Supporting data for "Bioentity2vec: Attribute- and Behavior-driven Representation for Multi-type Relationship Prediction between Various Bioentities"

Guo Zhen-Hao, You Zhu-Hong, Huang De-Shuang, Yi Hai-Cheng, Wang Yan-Bin & Chen Zhan-Heng
The explosive growth of genomic, chemical and pathological data provides new opportunities and challenges for humans to reexamine life activities in cells. However, there exist few computational models that aggregate various bioentities to comprehensively reveal the physical and functional landscape of biological system. Here, we construct a graph called Molecular Association Network (MAN) and a representation method called Bioentity2vec. Specifically, MAN is a heterogeneous attribute network consists of 18 kinds of edges (relationships) among 8...

Supporting data for "Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping and Hi-C"

Field A Matt, Rosen D Benjamin, Dudchenko Olga, Chan K.F. Eva, Minoche E. Andre, Edwards J. Richard, Barton Kirston, Lyons J. Ruth, Enosi Tuipulotu Daniel, Hayes M. Vanessa, Omer Arina, Colaric Zane, Keilwagen Jens, Skvortsova Ksenia, Bogdanovic Ozren, Smith A M, Aiden Lieberman Erez, Smith P.L. Timothy, Zammit A. Robert & J. O. Ballard William
The German Shepherd Dog (GSD) is one of the most common breeds on earth and has been bred for its utility and intelligence. It is often first choice for police and military work, as well as protection, disability assistance and search-and-rescue. Yet, GSD’s are well known to be afflicted with a range of genetic diseases that can interfere with their training. Such diseases are of particular concern when they occur later in life, and fully...

Supporting data for "*-DCC: A platform to collect, annotate and explore a large variety of sequencing experiments"

Hörtenhuber Matthias, Mukarram Kadir Abdul, Stoiber Marcus, Brown B James & Daub Oliver Carsten
Over the last few years the variety of experimental designs and protocols for sequencing experiments increased greatly. To assure the wide usability of the produced data beyond an individual project, rich and systematic annotation of the underlying experiments is of outstanding importance.
We first developed an annotation structure which captures the overall experimental design as well as the relevant details of the steps from the biological sample to the library preparation, the sequencing procedure and...

Supporting data for "PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes"

Zafeiropoulos Haris, Quoc Ha Viet, Vasileiadou Katerina, Potirakis Antonis, Arvanitidis Christos, Topalis Pantelis, Pavloudi Christina & Pafilis Evangelos
Environmental DNA (eDNA) and metabarcoding allow the identification of a mixture of species individuals and launch a new era in bio- and eco-assessment. A great number of steps are required to obtain taxonomically assigned matrices from raw data. For most of these, a plethora of tools are available; each tool’s execution parameters need to be tailored to reflect each experiment’s idiosyncrasy. Adding to this complexity, the computation capacity of High Performance Computing systems is frequently...

Peer review of "Refgenie: a reference genome resource manager"

Bernie Pope
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Refgenie: a reference genome resource manager"

Christophe Dessimoz
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Refgenie: a reference genome resource manager"

Bernie Pope
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Refgenie: a reference genome resource manager"

Katherine James
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Refgenie: a reference genome resource manager"

Andrew Yates
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Compartment and hub definitions tune metabolic networks for metabolomic interpretations"

Shen Ton
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Compartment and hub definitions tune metabolic networks for metabolomic interpretations"

Shen Tong
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Compartment and hub definitions tune metabolic networks for metabolomic interpretations"

Heinz-Bernd Schuttler
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "A highly contiguous genome assembly of the bat hawkmoth Hyles vespertilio (Lepidoptera: Sphingidae)"

Simon Baxter
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "A highly contiguous genome assembly of the bat hawkmoth Hyles vespertilio (Lepidoptera: Sphingidae)"

Reuben William Nowell
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Telescope: an interactive tool for managing large-scale analysis from mobile devices"

Shunxing Ba
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Telescope: an interactive tool for managing large-scale analysis from mobile devices"

Riccardo Miotto
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Telescope: an interactive tool for managing large-scale analysis from mobile devices"

Shunxing Bao
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "Telescope: an interactive tool for managing large-scale analysis from mobile devices"

Riccardo Miotto
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "3D revelation of phenotypic variation, evolutionary allometry, and ancestral states of corolla shape: a case study of clade Corytholoma (subtribe Ligeriinae, family Gesneriaceae)"

Mao Li
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "3D revelation of phenotypic variation, evolutionary allometry, and ancestral states of corolla shape: a case study of clade Corytholoma (subtribe Ligeriinae, family Gesneriaceae)"

Mao Li
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "3D revelation of phenotypic variation, evolutionary allometry, and ancestral states of corolla shape: a case study of clade Corytholoma (subtribe Ligeriinae, family Gesneriaceae)"

Daniel H Chitwood
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "A high-quality chromosomal genome assembly of Diospyros oleifera Cheng "

Manuel Spannagl
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "A high-quality chromosomal genome assembly of Diospyros oleifera Cheng "

Manuel Spannagl
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "A high-quality chromosomal genome assembly of Diospyros oleifera Cheng "

Manuel Spannagl
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Peer review of "A high-quality chromosomal genome assembly of Diospyros oleifera Cheng "

Robert VanBuren
This is the open peer reviewers comments and recommendations regarding the submitted GigaScience article and/or dataset.

Registration Year

  • 2020
    114

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    86
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