Data generated for manuscript 'Computing Marine Plankton Connectivity under Thermal Constraints' submitted to Frontiers in Marine Science, section Marine Ecosystem Ecology on 10 October 2022. The data consists of release locations file and mapping of locations to Lagrangian simulations, connectivity matrices, matrices from bootstrapping results and between sample station connectivities. The repository with the code to run the generate release locations, simulations and analysis is available at https://github.com/OceanParcels/atlanteco_tara_connectivity_plankton.

This folder contains data from Na Hu's PhD project, "The Role of Prosody in Communicating Subjectivity in Causality," supervised by Ted Sanders, Hugo Quené, and Aoju Chen. The project investigated how language users differentiate between objective causality, which refers to causal relationships that can be directly observed in the physical world, and subjective causality, which is constructed in the mental world. Previous research has shown that specialized causal connectives can help people determine the type...

In this data package, data is stored from experiments in the debris flow flume in the Earth Simulation Lab (Utrecht University). The experiments simulate the erosion of unconsolidated loosely packed beds of different compositions by debris flows. The data presented here are Digital Elevation Models (DEMs) of the experiments (raw point cloud data and processed DEMs), and timeseries of different sensors in the flume (laser distance sensors, pore pressure sensors, a geophone and a load...

Data and SPSS syntax

Code to predict first label positions in DNA constructs obtained by "mega primer" PCR assembly, convert the label positions to step size distributions, and to fit experimental step size data using simulated step size distributions. The code is first described by Yi-Yun Lin, Tine Brouns, Pauline J. Kolbeck, Willem Vanderlinden, and Jan Lipfert "High-yield, ligation-free assembly of DNA constructs with nucleosome positioning sequence repeats for single molecule manipulation assays" Submitted Preprint available at https://www.biorxiv.org/content/10.1101/2023.01.05.522917v1 There...

Data package accompanying the publication "Improving the prediction of glassy dynamics by pinpointing the local cage" in the Journal of Chemical Physics. This package provides all the relevant information for the analysis on the cage state associated with three different glass formers (binary hard spheres, binary harmonic mixture, and binary Kob-Andersen mixture). In the paper we explore whether a simple linear regression algorithm combined with intelligently chosen structural order parameters can reach the accuracy of...

Data package accompanying the publication with the above title in Soft Matter [10.1039/D2SM01450E]. This package provides all the relevant information, scripts, and source codes for numerically studying the dynamics in a colloidal gel near an oscillating micro-bubble, using Brownian Dynamics. These simulations were used to determine a state diagram for the structure surrounding the bubble. The accompanying publication provides the full details. In brief, this package contains the data required to reproduce the graphs for...

Data package accompanying the publication with the above title in Physical Review E [to be filled in]. This package provides all the relevant information, scripts, and source codes for numerically studying colloidal gel formation with a buoyant force using a lattice-Boltzmann algorithm. The advantage is a GPU-compatible simulation, which is efficient in computing the long-range many-body hydrodynamic interactions and porous medium flows disrupting the nascent gel network. The downside of the approach is a limited...

This Dataset contains all data (and more!) required to replicate the results presented in the manuscript. All data processing is carried out in jupyter notebooks (DataProcessing_*.ipynb). Required python packages are listed at the end of this file. We employed FIBSEM data (focused ion beam scanning electron microscopy), MicroCT (micro X-Ray computed tomography) data, and SEM (scanning electron microscopy) data for our manuscript. The data is provided in 4 subfolders. Detailed information about the files in...

This is the repository of the supplementary data and it contains the following files: • Raw data files as original output of TD-PTR-ToF-MS for field blank measurements and PM2.5 sample measurements of GDB • Raw data files as original output of TD-PTR-ToF-MS for PS spiked measurements • xls Data analysis file including raw data, blank subtraction and LOD correction of all measurements for GDB • Final mass spectra of all experiments (GDB, field blanks, spiked)...