135,342 Works

flockture

Eric C. Anderson & Patrick D. Barry
Source code repository for program flockture. Code modified from structure to do what FLOCK does.

PRJDB2409

Masatoshi Matsunami, Jun Kitano, Osamu Kishida, Hirofumi Michimae, Toru Miura & Kinya Nishimura
BioProjecct of transcriptome of Hokkaido salamander include raw sequencing files, a de novo assembly file, and gene expression files.

Master Summary Table 2re_Seriatopora spp. GBR

Patricia A. Warner
This is a summary table of each individual used in the study, including the following data: sample name, designated species according to publication, population, mtDNA amplicon size, Symbiodinium ITS2 sequence, Lat/ Long, Habitat, Geographic Region, and Genbank Accession numbers.

Pairwise Population Geographic Distance Matrix_Seriatopora spp. GBR

Patricia A. Warner
Matrix of pairwise geographic distances among populations, Ln(d+1)

lib1_sucker_barcode_key

Elizabeth G. Mandeville, Thomas L. Parchman, David B. McDonald & C. Alex Buerkle
Barcode-ID pairs for individual fish for lane 1 of sequencing. (Please note that there are individuals included in this barcode file that belong to a different project, and are not discussed in the related paper. )

lib2_sucker_barcode_key

Elizabeth G. Mandeville, Thomas L. Parchman, David B. McDonald & C. Alex Buerkle
Barcode-ID pairs for individual fish for lane 2 of sequencing. (Please note that there are individuals included in this barcode file that belong to a different project, and are not discussed in the related paper. )

PopART sources

Jessica W. Leigh & David Bryant
Snapshot of sources archived from GitHub on 12 May 2015.

Chromopainter files zipped

Joyce Y. Kao, Asif Zubair, Matthew P. Salomon, Sergey V. Nuzhdin & Daniel Campo
Zipped folder containing scripts, input files, and README for running Chromopainter analysis

KP096263

Francisca Zepeda-Paulo, Blas Lavandero, Frédérique Mahéo, Emilie Dion, Yannick Outreman, Jean-Christophe Simon & Christian C. Figueroa
Microsatellite Ae29 sequence of Aphidius ervi

Pimiento&Balk.Dataset

Catalina Pimiento & Meghan Balk
Carcharocles megalodon tooth measurements and body size estimations from different geologic formations around the world.

fit_models_posterior

Graham J. Slater
R script to fit macroevolutionary models to trees from MrBayes Posterior distribution

SNPRelate_admixture

Joyce Y. Kao, Asif Zubair, Matthew P. Salomon, Sergey V. Nuzhdin & Daniel Campo
R script to run PCA analysis

Video_S4

Hayato Tanaka
MPEG video clip of the mating behaviour of Parapolycope spiralis (Ostracoda). Stage 4:male (right side) flexes the posterior of its body back and forth and then inserts the ejaculatory duct into the female (left side) genital opening, in reversed ventral-ventral mating position. Anterior of the male is in the direction of the lower left of the screen. Anterior of the female is in the direction of the upper left corner of the screen.

KP096261

Francisca Zepeda-Paulo, Blas Lavandero, Frédérique Mahéo, Emilie Dion, Yannick Outreman, Jean-Christophe Simon & Christian C. Figueroa
Microsatellite Ae22 sequence of Aphidius ervi

KP096258

Francisca Zepeda-Paulo, Blas Lavandero, Frédérique Mahéo, Emilie Dion, Yannick Outreman, Jean-Christophe Simon & Christian C. Figueroa
Microsatellite Ae08 sequence of Aphidius ervi

MY_OPTIMIZER

Saikat Sarkar, Debasish Roy & Vasu Ram Mohan
The specific optimization algorithm is written here. For solving the global optimization problem with a different algorithm, only this function needs to be modified.

PreCollapseGENEPOP_Update

Serena A. Caplins, Kimberly J. Gilbert, Claudia Ciotir, Jens Roland, Stephen F. Matter & Nusha Keyghobadi
Genotypic data for 7 microsatelite loci from individuals collected prior to the demographic collapse.

Comparison of SNS-Cre/TdT vs. Parv-Cre/TdT neuron expression profiles

Isaac M. Chiu, Lee B. Barrett, Erika Williams, David E. Strochlic, Seungkyu Lee, Andy D. Weyer, Shan Lou, Gregory Bryman, David P. Roberson, Nader Ghasemlou, Cara Piccoli, Ezgi Ahat, Victor Wang, Enrique J. Cobos, Cheryl L. Stucky, Qiufu Ma, Stephen D. Liberles & Clifford J. Woolf
Differential expression analysis of microarray data from SNS-Cre/TdTomato+ neurons (n=4) vs. Parv-Cre/TdTomato+ neurons (n=4). Transcripts are ranked by fold-change, with the following information given: Affymetrix ID, genebank accession number, gene symbol, description, average RMA normalized levels, standard deviation, fold-change, p-value and FDR.

Dryad Readme file

Frans X. Plooij
Describing the Gombe chimps data package including the unparsed digital copies of the chimp tapes and the metadata for the individual sound recordings.

Freud 2

Frans X. Plooij & Hetty Van De Rijt-Plooij
Second recordings of immature individual Freud

lib2_sucker_barcode_key

Elizabeth G. Mandeville, Thomas L. Parchman, David B. McDonald & C. Alex Buerkle
Barcode-ID pairs for individual fish for lane 2 of sequencing. (Please note that there are individuals included in this barcode file that belong to a different project, and are not discussed in the related paper. )

Supplementary File 2

Shahar Alon, Sandra C. Garrett, Erez Y. Levanon, Sara Olson, Brenton R. Graveley, Joshua J. C. Rosenthal & Eli Eisenberg
A spreadsheet with all the A-to-G modification sites detected in the coding regions of the squid, along with their number of supporting reads in all the tissues studied.

Allele frequencies

Elizabeth G. Mandeville, Thomas L. Parchman, David B. McDonald & C. Alex Buerkle
This file gives allele frequencies at 4095 genetic loci for 21 different populations of fish, spanning 5 species. This is the input file for calculation of Nei's D and construction of a neighbor joining tree, visualizing genetic distance among populations.

Chromopainter files zipped

Joyce Y. Kao, Asif Zubair, Matthew P. Salomon, Sergey V. Nuzhdin & Daniel Campo
Zipped folder containing scripts, input files, and README for running Chromopainter analysis

TableS1

Bruno Frédérich
List of studied species, with their ecological classifications (diet and farming behaviors) and their maximum standard length (SL). The origin of dissected specimens and Genbank number are also provided.

Registration Year

  • 2020
    5,857
  • 2019
    18,330
  • 2018
    22,070
  • 2017
    20,694
  • 2016
    19,072
  • 2015
    18,393
  • 2014
    16,959
  • 2013
    5,864
  • 2012
    3,841
  • 2011
    2,848

Resource Types

  • Dataset
    135,156
  • Text
    6
  • Collection
    4
  • Other
    3
  • Image
    2
  • Software
    1

Affiliations

  • French National Centre for Scientific Research
    775
  • University of Oxford
    601
  • University of British Columbia
    533
  • Cornell University
    508
  • University of Florida
    472
  • Uppsala University
    438
  • University of Exeter
    432
  • University of Zurich
    430
  • University of California, Davis
    428
  • University of Cambridge
    421