Original ScanAlyze file
Tab delimited text file - see ReadMe.txt for details
Genotypes of pre-emergent drones (PED) of all 8 colonies
This appendix explains our sample sizes (i.e. number of tanks of fish), family sizes, and replicates for which there is missing data for either the pecking assay or opsin assay.
The file contains microsatellite data (21 loci) from six wild brown trout populations in Western Jutland, Denmark, along with samples from two hatchery strains used for stocking the rivers. The samples from the wild populations consist of contemporary samples (2000-2006) and historical pre-stocking samples (1927-1956), the latter obtained by analyzing DNA from archived scale samples. See Hansen et al. (2009) for further details on the data and study. The file format is MSA [Dieringer D,...
Consensus alignment generated by removing nucleotide positions for which the alignment differed when comparing three alignments generated via ClustalX (with gap costs of 10, 15, and 20).
Tab-delimited file containing measurements of snout-vent length and head width for sub-Saharan frog genera Arthroleptis and Phrynobatrachus.
Partial Ldh sequences of moths collected in Sendai, Japan.
Aligned cyt b data for all individuals with the taxa labels in nexus file format.
COI sequences in MEGA format, grouped according to species/lineage
A zip file with an R workspace and a source file that executes all analyses conducted in R to generate Table 2. To execute, unzip the files into your working directory, load the file called "scopariaWorkspace.Rdata" into R, then source the file called "27may08analyses.R". Please note that the mantel tests are set to run for 200 permutations in this file, to make life easy when you are running... these mantel tests were actually run for...
Alignment files in FASTA format. There are 4 species and three genes, each in an individual file. The 4 species are: (1) Melampus coffeus, (2) Melampus bidentatus cryptic species NORTH, (3) Melampus bidentatus cryptic species SOUTH, (4) Melampus bidentatus cryptic species GULF. The 3 genes are: (1) Histone H3 (2) Cytochrome oxidase I (CO1) and (3) MCP, which has been Probable mitochondrial phosphate carrier protein.
This file includes the genotype data for EST markers, as described in Lowry et al. (2009) New Phytologist 183:776-788. These markers were genotyped in 191 recombinant inbred lines (RILs) from IM & DUN parents of Mimulus guttatus. Marker genotypes are: a=IM/IM homozygote, h=IM/DUN heterozygote, b=DUN/DUN homozygote. The markers are ordered by linkage group (1-14) and include distances (cM) between markers.
Length, in base-pairs, of alleles at 13 microsatellite loci in 41 individuals of captive lowland tapirs. Missing data coded as -9. Data collected with funds from the Copenhagen Zoo, Martha Pipper Research Award, and Canadian Foundation for Innovation.
PDFs contain force-displacement traces for all successful performance testing trials. Methods can be found in the original publication (Whitenack & Motta 2010. “Performance of shark teeth during puncture and draw: implications for the mechanics of cutting.” Biological Journal of the Linnean Society). “WhitenackMottaDraw.pdf” – contains all graphs for unidirectional draw tests on white grunt Haemulon plumieri. Each color represents a different individual shark tooth.