686,380 Works

Full mothur UNITE+INSD dataset 4

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
This dataset comprises of all quality filtered unclustered UNITE + INSD sequences in mothur format.

UNITE mothur release for Fungi

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
Three sets of mothur files are released, corresponding to the SHs resulting from clustering at the 97% and 99% threshold levels. The third set of files is the result of a dynamic use of clustering thresholds, such that some SHs are delimited at the 97% level, some at the 97.5% level, some at the 98% level, and so on; these choices were made manually by experts of those particular lineages of fungi. The syntax is...

UNITE mothur release for eukaryotes

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
Three sets of mothur files are released, corresponding to the SHs resulting from clustering at the 97% and 99% threshold levels. The third set of files is the result of a dynamic use of clustering thresholds, such that some SHs are delimited at the 97% level, some at the 97.5% level, some at the 98% level, and so on; these choices were made manually by experts of those particular lineages of fungi. The syntax is...

UNITE mothur release for Fungi 2

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
Three sets of mothur files are released, corresponding to the SHs resulting from clustering at the 97% and 99% threshold levels. The third set of files is the result of a dynamic use of clustering thresholds, such that some SHs are delimited at the 97% level, some at the 97.5% level, some at the 98% level, and so on; these choices were made manually by experts of those particular lineages of fungi. The syntax is...

UNITE mothur release for eukaryotes 2

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
Three sets of mothur files are released, corresponding to the SHs resulting from clustering at the 97% and 99% threshold levels. The third set of files is the result of a dynamic use of clustering thresholds, such that some SHs are delimited at the 97% level, some at the 97.5% level, some at the 98% level, and so on; these choices were made manually by experts of those particular lineages of fungi. The syntax is...

UNITE QIIME release for Fungi

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
Three sets of QIIME files are released, corresponding to the SHs resulting from clustering at the 97% and 99% threshold levels. The third set of files is the result of a dynamic use of clustering thresholds, such that some SHs are delimited at the 97% level, some at the 97.5% level, some at the 98% level, and so on; these choices were made manually by experts of those particular lineages of fungi. The syntax is...

UNITE QIIME release for eukaryotes

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
Three sets of QIIME files are released, corresponding to the SHs resulting from clustering at the 97% and 99% threshold levels. The third set of files is the result of a dynamic use of clustering thresholds, such that some SHs are delimited at the 97% level, some at the 97.5% level, some at the 98% level, and so on; these choices were made manually by experts of those particular lineages of fungi. The syntax is...

UNITE QIIME release for Fungi 2

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
Three sets of QIIME files are released, corresponding to the SHs resulting from clustering at the 97% and 99% threshold levels. The third set of files is the result of a dynamic use of clustering thresholds, such that some SHs are delimited at the 97% level, some at the 97.5% level, some at the 98% level, and so on; these choices were made manually by experts of those particular lineages of fungi. The syntax is...

UNITE QIIME release for eukaryotes 2

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
Three sets of QIIME files are released, corresponding to the SHs resulting from clustering at the 97% and 99% threshold levels. The third set of files is the result of a dynamic use of clustering thresholds, such that some SHs are delimited at the 97% level, some at the 97.5% level, some at the 98% level, and so on; these choices were made manually by experts of those particular lineages of fungi. The syntax is...

SH161668.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH596132.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, T. Takkis, A. Matheisen, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, A. Kruse, Matti Häkkilä, N.A. Sekretareva, Jüri Kõiv, Savi, Bálint Dima, Rein Drenkhan, Agate Mäekalla, Margarita Dueñas, Ursula Eberhardt, L.S. Blagodatskikh, Tobias G. Frøslev, E. Puhang, S. Ots, Masoomeh Ghobad-Nejhad … & Sirje Kalatšjan
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH288569.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH009371.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH103811.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH398018.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH680033.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, T. Takkis, A. Matheisen, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, A. Kruse, Matti Häkkilä, N.A. Sekretareva, Jüri Kõiv, Savi, Bálint Dima, Rein Drenkhan, Agate Mäekalla, Margarita Dueñas, Ursula Eberhardt, L.S. Blagodatskikh, Tobias G. Frøslev, E. Puhang, S. Ots, Masoomeh Ghobad-Nejhad … & Sirje Kalatšjan
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH675801.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, T. Takkis, A. Matheisen, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, A. Kruse, Matti Häkkilä, N.A. Sekretareva, Jüri Kõiv, Savi, Bálint Dima, Rein Drenkhan, Agate Mäekalla, Margarita Dueñas, Ursula Eberhardt, L.S. Blagodatskikh, Tobias G. Frøslev, E. Puhang, S. Ots, Masoomeh Ghobad-Nejhad … & Sirje Kalatšjan
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH405730.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH256243.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH245340.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH556895.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, T. Takkis, A. Matheisen, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, A. Kruse, Matti Häkkilä, N.A. Sekretareva, Jüri Kõiv, Savi, Bálint Dima, Rein Drenkhan, Agate Mäekalla, Margarita Dueñas, Ursula Eberhardt, L.S. Blagodatskikh, Tobias G. Frøslev, E. Puhang, S. Ots, Masoomeh Ghobad-Nejhad … & Sirje Kalatšjan
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH024226.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH089094.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH150073.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH143404.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

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