686,107 Works

SH508493.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, T. Takkis, A. Matheisen, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, A. Kruse, Matti Häkkilä, N.A. Sekretareva, Jüri Kõiv, Savi, Bálint Dima, Rein Drenkhan, Agate Mäekalla, Margarita Dueñas, Ursula Eberhardt, L.S. Blagodatskikh, Tobias G. Frøslev, E. Puhang, S. Ots, Masoomeh Ghobad-Nejhad … & Sirje Kalatšjan
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH325592.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH420991.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH637020.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, T. Takkis, A. Matheisen, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, A. Kruse, Matti Häkkilä, N.A. Sekretareva, Jüri Kõiv, Savi, Bálint Dima, Rein Drenkhan, Agate Mäekalla, Margarita Dueñas, Ursula Eberhardt, L.S. Blagodatskikh, Tobias G. Frøslev, E. Puhang, S. Ots, Masoomeh Ghobad-Nejhad … & Sirje Kalatšjan
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH006607.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH248511.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH236963.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH589187.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, T. Takkis, A. Matheisen, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, A. Kruse, Matti Häkkilä, N.A. Sekretareva, Jüri Kõiv, Savi, Bálint Dima, Rein Drenkhan, Agate Mäekalla, Margarita Dueñas, Ursula Eberhardt, L.S. Blagodatskikh, Tobias G. Frøslev, E. Puhang, S. Ots, Masoomeh Ghobad-Nejhad … & Sirje Kalatšjan
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH019917.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

SH529903.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, T. Takkis, A. Matheisen, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, A. Kruse, Matti Häkkilä, N.A. Sekretareva, Jüri Kõiv, Savi, Bálint Dima, Rein Drenkhan, Agate Mäekalla, Margarita Dueñas, Ursula Eberhardt, L.S. Blagodatskikh, Tobias G. Frøslev, E. Puhang, S. Ots, Masoomeh Ghobad-Nejhad … & Sirje Kalatšjan
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

TH004931

Urmas Kõljalg, Kessy Abarenkov, Leho Tedersoo, R. Henrik Nilsson, Tom May, Karl-Henrik Larsson, Markus Döring, Dmitry Schigel, Martin Ryberg, Santiago Sánchez-Ramírez & Mohammad Bahram
Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against...

SH162146.07FU

Urmas Kõljalg, Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Anders Bjørnsgard Aas, Rachel Adams, Artur Alves, Joseph F. Ammirati, A. Elizabeth Arnold, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Synnøve Botnen, Sarah Bourlat, Tanya Cheeke, Bálint Dima, Rein Drenkhan, Camila Duarte, Margarita Dueñas, Ursula Eberhardt, Hanna Friberg, Tobias G. Frøslev, Sigisfredo Garnica, József Geml, Masoomeh Ghobad-Nejhad … & Christian Wurzbacher
UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are...

UNITE general FASTA release for Fungi

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
This release consists of a single FASTA file: the RepS/RefS of all SHs, adopting the dynamically use of clustering thresholds whenever available.

UNITE general FASTA release for Fungi 2

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
This release consists of a single FASTA file: the RepS/RefS of all SHs, adopting the dynamically use of clustering thresholds whenever available. Includes global and 97% singletons.

UNITE general FASTA release for eukaryotes

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
This release consists of a single FASTA file: the RepS/RefS of all SHs, adopting the dynamically use of clustering thresholds whenever available.

UNITE general FASTA release for eukaryotes 2

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
This release consists of a single FASTA file: the RepS/RefS of all SHs, adopting the dynamically use of clustering thresholds whenever available. Includes global and 97% singletons.

Full UNITE+INSD dataset for Fungi

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
This FASTA file ("UNITE+INSDC") comprises “all” fungal ITS sequences of the UNITE and INSDC databases present in UNITE Species Hypotheses, updated and released some four times a year. Locked UNITE sequences and low quality (and overly short) INSDC sequences are however excluded.

Full UNITE+INSD dataset for eukaryotes

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
This FASTA file ("UNITE+INSDC") comprises “all” eukaryote ITS sequences of the UNITE and INSDC databases present in UNITE Species Hypotheses, updated and released some four times a year. Locked UNITE sequences and low quality (and overly short) INSDC sequences are however excluded.

UNITE top50 release

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
This is a FASTA release of the sequences of the "Top 50 most wanted fungi" paper. One representative sequence from each SH (singletons as well as non-singletons) is provided. Approximately 1,000 compound clusters are unidentified at each of the phylum, class, and order levels, such that this file contains significantly more than 50 sequences. Use this file if you want to find out if any of your newly recovered OTUs belong among the “most wanted”...

UNITE USEARCH/UTAX release for Fungi

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
Reference file for USEARCH/UTAX. For optimized parameters and further information, please refer to the UTAX UNITE page. This is the "dynamic" release of the UNITE species hypotheses system, with singleton species hypotheses included. Any parts of the 18S and 28S are left in these sequences. This reference file can be used for ITS1-only or ITS2-only sequences if parameters trained on ITS1 or 2 only ('taxconfs' files) are used. ITS regions can be extracted using the...

UNITE USEARCH/UTAX release for eukaryotes

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
Reference file for USEARCH/UTAX. For optimized parameters and further information, please refer to the UTAX UNITE page. This is the "dynamic" release of the UNITE species hypotheses system, with singleton species hypotheses included. Any parts of the 18S and 28S are left in these sequences. This reference file can be used for ITS1-only or ITS2-only sequences if parameters trained on ITS1 or 2 only ('taxconfs' files) are used. ITS regions can be extracted using the...

Full mothur UNITE+INSD dataset 1

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
This dataset comprises of all quality filtered unclustered UNITE + INSD fungal sequences included in the UNITE Species Hypotheses in mothur format.

Full mothur UNITE+INSD dataset 2

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
This dataset comprises of all quality filtered unclustered fungal UNITE + INSD sequences in mothur format.

Full mothur UNITE+INSD dataset 3

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
This dataset comprises of all quality filtered unclustered UNITE + INSD sequences included in the UNITE Species Hypotheses in mothur format.

Full mothur UNITE+INSD dataset 4

Kessy Abarenkov, Allan Zirk, Timo Piirmann, Raivo Pöhönen, Filipp Ivanov, R. Henrik Nilsson & Urmas Kõljalg
This dataset comprises of all quality filtered unclustered UNITE + INSD sequences in mothur format.

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