10,856 Works

least

Least soil moisture duration

eimd-sswd v1.0: Supplemental Jupyter notebooks and data

Steven Roberts
Jupyter Notebooks and data supplemental to the manuscript: "Up in arms: Immune and nervous system response to sea star wasting disease"

PTEN-paper

Mikhail Bashkurov
This repository contains a collection of Acapella and Matlab code, used in Nature Communications paper "PTEN Regulates Cilia Through Dishevelled"

Neutron Physics Game

Robert Carlsen & Matthew Gidden
A simple game to show basic and complicated concepts related to nuclear engineering.

ALTWAVE scripts and datasets

Christian Appendini & Victor Camacho
The scripts supplied are needed to run ALTWAVE a matlab based toolbox to validate wave model results with GlobWave altimetry data.

Simulation Code for OLRE and Beta-Binomial Overdispersed Models

Xavier Harrison
Code accompanying Harrison (2015) submitted to PeerJ

Territory analysis

Jenny Dunn
Script from: Dunn, J. C., Hamer, K. C. & Benton, T. G. Anthropogenically-mediated density dependence in a declining farmland bird. PLOS ONE 2015 (accepted)

Nestling growth analysis

Jenny Dunn
Script from: Dunn, J. C., Hamer, K. C. & Benton, T. G. Anthropogenically-mediated density dependence in a declining farmland bird. PLOS ONE 2015 (accepted)

Nest survival (nestling) and brood failure analysis

Jenny Dunn
Script from: Dunn, J. C., Hamer, K. C. & Benton, T. G. Anthropogenically-mediated density dependence in a declining farmland bird. PLOS ONE 2015 (accepted)

Fig. 7 (from 4.4 Example of an incorrect specification of local behaviour)

Pieter Van Gorp
A BPMN 2.0 model created with http://academic.signavio.com/ and exported to BPMN 2 XML. The example contains an intential flaw: the B2B interaction between an investor and custodian contains a design error which can be detected by means of the verification techniques described in the paper.

Fault-tolerant LOQC

Ying Li
It is the code of numerical simulations in the paper http://arxiv.org/abs/1504.02457

Causal-Bayesian-NetworkX

Mike Pacer
This is a set of utilities and formats that illustrate how one could begin to perform operations on causal graphs and sample over these graphs.

GiMPy 1.3

Ted Ralphs & Aykut Bulut
Graph Methods in Python (GiMPy) is a Python graph library containing pure Python implementations of a variety of graph algorithms. The goal is clarity in implementation rather than eficiency. Most methods have an accompanying visualization and are thus appropriate for use in the classroom. Documentation for the API is here: http://pythonhosted.org/coinor.gimpy Installation: easy_install coinor.gimpy

Gender Research and the Role of Feminist Theory in Archaeology (2014 Chacamool presentation)

Ben Marwick & Ian Kretzler
This repository contains the code used to generate the figures in the presentation. The data can be obtained freely from http://dfr.jstor.org/ We can share our data by request, but we’re not sure that the JSTOR terms of service allow us to post it publically.

SynPAnal Program

Sang Lee
Software for Rapid Quantification of the Density and Intensity of Protein Puncta from Fluorescence Microscopy Images of Neurons

least

Least soil moisture duration

R markdown files for Mallon, E. B. et al. Acute and chronic gregarisation are associated with distinct DNA methylation fingerprints in desert locusts. Sci. Rep. 6, 35608; doi: 10.1038/srep35608 (2016).

Eamonn Mallon
Several scripts needed to produce graphs and analysis for locust ms-aflp data.

real_data and bootstrap_data produce the phist for over the range of tolerances.

These are combined by Figure_1_bootstrap_plot.

tolerance10-20 calculates the phist for the chosen tolerances.

Figure_2 uses this data as the basis for the ms-aflp analysis and a modified pcoa graph which produces figure 2 in the paper.

Matlab scripts

& Freddie Salsbury
A Matlab script to perform principal component analysis on molecular dynamics trajectories and construct free energy surfaces using predominant principal components.

C++ code from \"Estimating contemporary migration rates: effect and joint inference of inbreeding, null alleles and mistyping\"

Juan José Robledo-Arnuncio & Oscar E. Gaggiotti
C/C++ code implementing the Bayesian estimation method described in:

Robledo-Arnuncio JJ, Gaggiotti OE (in press) Estimating contemporary migration rates: effect and joint inference of inbreeding, null alleles and mistyping. Journal of Ecology.

An executable file for Windows OS, along with the User Manual and test data sets will soon be available here.



BifLib (v1.0)

Martin O'Reilly
Library for generating BIFs (Basic Image Features) from images.

Leroux et al_StDMs_RCode

Shawn Leroux
R Code for Leroux et al. Stoichiometry distribution models: ecological stoichiometry at the landscape scale

Leroux et al_StDMs_RCode

Shawn Leroux
R Code for Leroux et al. Stoichiometry distribution models: ecological stoichiometry at the landscape scale

Python codes for solving modes of anisotropic waveguides with arbitrary permittivity and permeability

These are python codes which can be used to solve transverse modes of waveguides with arbitrary permittivity and permeability.

Data analysis commands and R code for analysis

David Needham
This file contains all of the commands used in sequence data analysis and R code utilized for statistics and figure generation.

Finite Pulse Effects in Single and Double Quantum Spectroscopies

Václav Perlík, Jürgen Hauer &
These Mathematica notebooks are a supplementary material to manuscript [1] and contain analytical expressions of 2D spectra of a 3-level electronic system probed by Lorentzian laser pulses.
[1] V. Perlík, J. Hauer and F. Šanda, Finite Pulse Effects in Single and Double Quantum Spectroscopies, J. Opt. Soc. Am. B, 2016

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