76 Works

Glycine tomentella GBS

Patrick Brown
GBS data from soybean lines carrying introgressions from Glycine tomentella. This project is led by Dr. Randy Nelson, USDA scientist at the University of Illinois. Fastq files contain raw Illumina data. Txt files are keyfiles containing barcodes for each genetic entity.

RAD-seq genotypes for a Miscanthus sinensis diversity panel

Lindsay V. Clark, Maria Stefanie Dwiyanti, Kossonou G. Anzoua, Joe E. Brummer, Katarzyna Glowacka, Megan Hall, Kweon Heo, Xiaoli Jin, Alexander E. Lipka, Junhua Peng, Toshihiko Yamada, Ji Hye Yoo, Chang Yeon Yu, Hua Zhao, Stephen P. Long & Erik J. Sacks
Genotype calls are provided for a collection of 583 Miscanthus sinensis clones across 1,108,836 loci mapped to version 7 of the Miscanthus sinensis reference genome. Sequence and alignment information for all unique RAD tags is also provided to facilitate cross-referencing to other genomes.

Glycine soja GBS

Patrick Brown
GBS data for G. max x G. soja crosses, a project led by Dr. Randy Nelson.

Spatial and Temporal Allocation of Ammonia Emissions from Fertilizer Application Important for Air Quality Predictions in U.S. Corn Belt

Srinidhi Balasubramanian, Sotiria Koloutsou-Vakakis & Mark Rood
This dataset contains scripts and data developed as a part of the research manuscript titled “Spatial and Temporal Allocation of Ammonia Emissions from Fertilizer Application Important for Air Quality Predictions in U.S. Corn Belt”. This includes (1) Spatial and temporal factors for ammonia emissions from agricultural fertilizer usage developed using the hybrid ISS-DNDC method for the Midwest U.S., (2) CAMx job scripts and outputs of predictions of ambient ammonia and total and speciated PM2.5, (3)...

Matched Radar and Microphysical Properties During MC3E

Joseph Finlon
This dataset contains best estimates of the particle size distribution and measurements of the radar reflectivity factor and total water content for instances where ground-based radar and airborne microphysical observations were considered collocated with each other.

Gulf survival weather data

Michael Ward
Weather data used in the survival (mark-recapture) analysis of Swainson's Thrushes crossing the Gulf of Mexico

Constraining a Historical Black Carbon Emission Inventory of U.S. for 1960 to 2000 data

Tianye Sun, Liang Liu, Mark Flanner, Thomas Kirchstetter, Jiao Chaoyi, Chelsea Preble, Wayne Chang & Tami Bond

Datasets from the study \"OCTAL: Optimal Completion of Gene Trees in Polynomial Time\"

Sarah Christensen, Erin K Molloy, Pranjal Vachaspati & Tandy Warnow
Datasets used in the study, "OCTAL: Optimal Completion of Gene Trees in Polynomial Time," under review at Algorithms for Molecular Biology. Note: DS_STORE file in 25gen-10M folder can be disregarded.

[Redacted]

Removed by Illinois Data Bank curators. Contact us for more information. https://databank.illinois.edu/help#contact

Error_Analysis

Xiaoru Dong, Jingyi Xie, Linh Hoang & Jodi Schneider
File Name: Error_Analysis.xslx Data Preparation: Xiaoru Dong Date of Preparation: 2018-12-12 Data Contributions: Xiaoru Dong, Linh Hoang, Jingyi Xie, Jodi Schneider Data Source: The classification prediction results of prediction in testing data set Associated Manuscript authors: Xiaoru Dong, Jingyi Xie, Linh Hoang, and Jodi Schneider Associated Manuscript, Working title: Machine classification of inclusion criteria from Cochrane systematic reviews Description: The file contains lists of the wrong and correct prediction of inclusion criteria of Cochrane Systematic...

Inclusion_Criteria_Annotation

Xiaoru Dong, Jingyi Xie & Hoang Linh
File Name: Inclusion_Criteria_Annotation.csv Data Preparation: Xiaoru Dong Date of Preparation: 2018-12-14 Data Contributions: Jingyi Xie, Xiaoru Dong, Linh Hoang Data Source: Cochrane systematic reviews published up to January 3, 2018 by 52 different Cochrane groups in 8 Cochrane group networks. Associated Manuscript authors: Xiaoru Dong, Jingyi Xie, Linh Hoang, and Jodi Schneider. Associated Manuscript, Working title: Machine classification of inclusion criteria from Cochrane systematic reviews. Description: The file contains lists of inclusion criteria of Cochrane...

ARL IR Metadata Documentation Website Review Data

Ayla Stein Kenfield
Spreadsheet with data about whether or not the indicated institutional repository website provides metadata documentation. See readme file for more information.

NEXUS data file for phylogenetic analysis of Iassinae (Hemiptera: Cicadellidae)

Sindhu Krishnankutty, Christopher Dietrich, Wu Dai & Madhura Siddappaji
The text file contains the original DNA sequence data used in the phylogenetic analyses of Krishnankutty et al. (2016: Systematic Entomology 41: 580–595). The text file is marked up according to the standard NEXUS format commonly used by various phylogenetic analysis software packages. The file will be parsed automatically by a variety of programs that recognize NEXUS as a standard bioinformatics file format. The file contains five separate data blocks, one for each character partition...

A 3DCNN-based method to land cover classification

Zewei Xu & Shaowen Wang
A 3D CNN method to land cover classification using LiDAR and multitemporal imagery

Data from: Sun-Induced chlorophyll fluorescence, photosynthesis, and light use efficiency of a soybean field

Guofang Miao & Kaiyu Guan
This dataset provides the time series (Aug. - Sep. 2016) data of sun-induced chlorophyll fluorescence, photosynthesis, photosynthetically active radiation, and associated vegetation indices that were collected in a soybean field in the farm of University of Illinois at Urbana and Champaign. Data contain 255 records and 6 variables (PPFD-IN: Photosynthetically active radiation; GPP-Gross Primary Production; SIF: Sun-Induced Fluorescence; NDVI: Normalized Difference Vegetation Index; Rededge: Rededge Index; Redege_NDVI: Rededge Normalized Difference Vegetation Index). The timestamp uses...

Isolated artificial spin ice kinetics

Yuyang Lao & Peter Schiffer
This is the experimental data of isolated nanomagnet islands with or without the presence of large nanomagnet islands. The small islands are made of Permalloy materials with size of 170 nm by 470 nm by 2.5 nm. The systems are measured at a temperature where the small islands are fluctuating around room temperature. The data is recorded as photoemission electron microscopy intensity. More details about the data can be found in the note.txt and Spe_2016.xlsx...

Dataset for: In-cell titration of small solutes controls protein stability and aggregation

Shahar Sukenik, Mohammed Salam, Yuhan Wang & Martin Gruebele
This deposit contains all raw data and analysis from the paper "In-cell titration of small solutes controls protein stability and aggregation". Data is collected into several types: 1) analysis*.tar.gz are the analysis scripts and the resulting data for each cell. The numbers correspond to the numbers shown in Fig.S1. (in publication) 2) scripts.tar.gz contains helper scripts to create the dataset in bash format. 3) input.tar.gz contains headers and other information that is fed into bash...

Expert assessment of RobotReviewer data extraction performance on 10 articles

Frank Scannapieco, Linh Hoang & Jodi Schneider
The PDF describes the process and data used for the heuristic user evaluation described in the related article “Evaluating an automatic data extraction tool based on the theory of diffusion of innovation” by Linh Hoang, Frank Scannapieco, Linh Cao, Yingjun Guan, Yi-Yun Cheng, and Jodi Schneider (under submission).
Frank Scannapieco assessed RobotReviewer data extraction performance on ten articles in 2018-02. Articles are included papers from an update review: Sabharwal A., G.-F.I., Stellrecht E., Scannapeico F.A....

Data from: host and parasite morphology influence congruence between host and parasite phylogenies

Andrew Sweet, Sarah Bush, Daniel Gustafsson, Julie Allen, Emily DiBlasi, Heather Skeen, Jason Weckstein & Kevin Johnson
Concatenated sequence alignment, phylogenetic analysis files, and relevant software parameter files from a cophylogenetic study of Brueelia-complex lice and their avian hosts. The sequence alignment file includes a list of character blocks for each gene alignment and the parameters used for the MrBayes phylogenetic analysis. 1) Files from the MrBayes analyses: a) a file with 100 random post-burnin trees (50% burnin) used in the cophylogenetic analysis - analysisrandom100_trees_brueelia.tre b) a majority rule consensus tree -...

MapAffil 2016 dataset -- PubMed author affiliations mapped to cities and their geocodes worldwide

Vetle I. Torvik
MapAffil 2016 dataset -- PubMed author affiliations mapped to cities and their geocodes worldwide. Prepared by Vetle Torvik 2018-04-05 The dataset comes as a single tab-delimited Latin-1 encoded file (only the City column uses non-ASCII characters), and should be about 3.5GB uncompressed. • How was the dataset created? The dataset is based on a snapshot of PubMed (which includes Medline and PubMed-not-Medline records) taken in the first week of October, 2016. Check here for information...

Self-citation analysis data based on PubMed Central subset (2002-2005)

Shubhanshu Mishra, Brent D Fegley, Jana Diesner & Vetle I. Torvik
Self-citation analysis data based on PubMed Central subset (2002-2005) ---------------------------------------------------------------------- Created by Shubhanshu Mishra, Brent D. Fegley, Jana Diesner, and Vetle Torvik on April 5th, 2018 ## Introduction This is a dataset created as part of the publication titled: Mishra S, Fegley BD, Diesner J, Torvik VI (2018) Self-Citation is the Hallmark of Productive Authors, of Any Gender. PLOS ONE. It contains files for running the self citation analysis on articles published in PubMed Central...

[Redacted]

Removed by Illinois Data Bank curators. Contact us for more information. https://databank.illinois.edu/help#contact

Words_Selected_by_Information_Gain

Xiaoru Dong, Jingyi Xie & Linh Hoang
File Name: WordsSelectedByInformationGain.csv Data Preparation: Xiaoru Dong, Linh Hoang Date of Preparation: 2018-12-12 Data Contributions: Jingyi Xie, Xiaoru Dong, Linh Hoang Data Source: Cochrane systematic reviews published up to January 3, 2018 by 52 different Cochrane groups in 8 Cochrane group networks. Associated Manuscript authors: Xiaoru Dong, Jingyi Xie, Linh Hoang, and Jodi Schneider. Associated Manuscript, Working title: Machine classification of inclusion criteria from Cochrane systematic reviews. Description: the file contains a list of 1655...

Words_Selected_by_Manual_Analysis

Xiaoru Dong, Jingyi Xie & Linh Hoang
File Name: WordsSelectedByManualAnalysis.csv Data Preparation: Xiaoru Dong, Linh Hoang Date of Preparation: 2018-12-14 Data Contributions: Jingyi Xie, Xiaoru Dong, Linh Hoang Data Source: Cochrane systematic reviews published up to January 3, 2018 by 52 different Cochrane groups in 8 Cochrane group networks. Associated Manuscript authors: Xiaoru Dong, Jingyi Xie, Linh Hoang, and Jodi Schneider. Associated Manuscript, Working title: Machine classification of inclusion criteria from Cochrane systematic reviews. Description: this file contains the list of 407...

Scripts for testing the error rate of polyRAD

Lindsay V. Clark, Alexander E. Lipka & Erik J. Sacks
This set of scripts accompanies the manuscript describing the R package polyRAD, which uses DNA sequence read depth to estimate allele dosage in diploids and polyploids. Using several high-confidence SNP datasets from various species, allelic read depth from a typical RAD-seq dataset was simulated, then genotypes were estimated with polyRAD and other software and compared to the true genotypes, yielding error estimates.

Registration Year

  • 2018
    76

Resource Types

  • Dataset
    75

Affiliations

  • University of Illinois
    20