76 Works

Effect of Micro-patterned Mucin on Quinolone and Rhamnolipid Profiles of Mucoid Pseudomonas aeruginosa under Antibiotic Stress

Dharmeshkumar Parmar, Jin Jia, Joshua Shrout, Jonathan Sweedler & Paul Bohn
#### Details of Pseudomonas aeruginosa biofilm dataset #### ----------------*Folder Structure*------------------------------------- This dataset contains peak intensity tables extracted from mass spectrometry imaging (MSI) data using tools, SCiLS and MSI reader. There are 2 folders in "MSI-Data-Paeruginosa-biofilms-UIUC-DP-JVS-July2022.zip", each folder contains 3 sub-folders as listed below. 1. PellicleBiofilms-and-Supernatant [Pellicle biofilms collected from air-liquid interface and spend supernatant medium after 96 h incubation period]: (1) Full-Scan-Data-96h; (2) MSMS-data-from-C7-Quinolones-96h; and (3) MSMS-data-from-C9-Quinolones-96h 2. StaticBiofilms [Static biofilms grown on mucin surface]:...

Spatial drivers of wetland bird occupancy within an urbanized matrix in the Upper Midwestern United States

Anastasia Rahlin, Sarah Saunders & Stephanie Beilke
Dataset for "Spatial drivers of wetland bird occupancy within an urbanized matrix in the Upper Midwestern United States" manuscript contains occupancy data for ten wetland bird species used in single-species occupancy models at four spatial scales and four wetland habitat types. Data were collected from 2017-2019 in NE Illinois and NW Indiana. Dataset includes wetland bird occupancy data, habitat parameter values for each survey location, and R code used to run analyses.

Data from: Dynamic occupancy models indicate Black-billed and Yellow-billed Cuckoos have high rates of turnover during the breeding season

Claire A. Johnson & Thomas J. Benson
Data in this publication were used to examine the effects of environmental and temporal covariates on detection probability, and the effects of habitat and landscape level covariates on occupancy and within season turnover of Black-billed Cuckoos and Yellow-billed Cuckoos. Data were collected between 2019-2020 in northern Illinois, USA. Procedures were approved by the Illinois Institutional Animal Care and Use Committee (IACUC), protocol no. 19086.

Dataset for Dense sampling of taxa and characters improves phylogenetic resolution among deltocephaline leafhoppers (Hemiptera: Cicadellidae: Deltocephalinae)

Yanghui Cao, Christopher H. Dietrich, James N. Zahniser & Dmitry A. Dmitriev
The following files were used to reconstruct the phylogeny of the leafhopper subfamily Deltocephalinae, using IQ-TREE v1.6.12 and ASTRAL v 4.10.5. 1) taxon_sampling.csv: contains the sequencing ids (1st column) and the taxonomic information (2nd column) of each sample. Sequencing ids were used in the alignment files and partition files. 2)concatenated_nt.phy: concatenated nucleotide alignment used for the maximum likelihood analysis of Deltocephalinae by IQ-TREE v1.6.12. The file lists the sequences of 163,365 nucleotide positions from 429...

Data for Refining the role of nitrogen mineralization in mycorrhizal nutrient syndromes

Georgia S. Seyfried, Meghan G. Midgley, Richard Phillips & Wendy Yang
This dataset includes data on soil properties, soil N pools, and soil N fluxes presented in the manuscript, "Refining the role of nitrogen mineralization in mycorrhizal nutrient syndromes". Please refer to that publication for details about methodologies used to generate these data and for the experimental design.

Data for Long-lifetime spin excitations near domain walls in 1T-TaS2

Vidya Madhavan & Anuva Aishwarya
The data files are for the paper entitled: Long-lifetime spin excitations near domain walls in 1T-TaS2 to be published in PNAS. The data was obtained on a 300 mK custom designed Unisoku scanning tunneling microscope using the Nanonis module. All the data files have been named based on the Figure numbers that they represent.

Articles With PubMed Identifiers

Yogeshwar Kansara & Khanh Linh Hoang
The data file contains a list of articles with PMIDs information, which were used in a project associated with the manuscript "Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews".

Data for Quantifying transportation energy vulnerability and its spatial patterns in the United States.

Shanshan Liu & Eleftheria Kontou
This data set contains all the map data used for "Quantifying transportation energy vulnerability and its spatial patterns in the United States". The multiple dimensions (i.e., exposure, sensitivity, adaptive capacity) of transportation energy vulnerability (TEV) at the census tract level in the United States, the changes in TEV with electric vehicles adoption, and the detailed data for Chicago, Los Angeles, and New York are in the dataset.

Data for: The Carbon Footprint of Cold Chain Food Flows in the United States

Junren Wang, Deniz Berfin Karakoc & Megan Konar
This dataset is a estimation of county-to-county commodity delivery through cold chain in 2017. For each county pair, the weight[kg] and value[$] of the cold chain flow between origin and destination for SCTG 5 and SCTG 7 commodities are estimated by our model. - SCTG 5 - Meat, poultry, fish, seafood, and their preparations - SCTG 7 - Other prepared foodstuffs, fats, and oils

Dataset for On the Importance of Firth Bias Reduction in Few-Shot Classification

Ehsan Saleh, Saba Ghaffari, David Forsyth & Wang Yu-Xiong
This data repository includes the features and the trained backbone parameters used in the ICLR 2022 Paper "On the Importance of Firth Bias Reduction in Few-Shot Classification". The code accompanying this data is open-source and available at https://github.com/ehsansaleh/firth_bias_reduction The code and the data have three modules: 1. The "code_firth" module (10 files) relates to the basic ResNet backbones and logistic classifiers (e.g., Figures 2 and 3 in the main paper). 2. The "code_s2m2rf" module (2...

Data for Evaluating bat boxes: Design and placement alter bioenergetic costs and overheating risk

Reed D. Crawford, Luke E. Dodd, Frank E. Tillman & Joy M. O'Keefe
This dataset contains our bi-hourly temperature recordings from 40 rocket box style artificial roosts of 5 designs deployed in Indiana and Kentucky, USA from April through September 2019. This dataset also includes our endothermic and faculatively heterothermic daily energy expenditure datasets used in our bioenergetic analysis, which were calculated from the bi-hourly rocket box temperature data. Lastly, we include our overheating counts dataset which summarizes daily overheating events (i.e., temperatures > 40 Celsius) in each...

Biological and Simulated datasets for testing the SCAMPP framework for phylogenetic placement methods

Eleanor Wedell & Tandy Warnow
Thank you for using these datasets! These files contain trees and reference alignments, as well as the selected query sequences for testing phylogenetic placement methods against and within the SCAMPP framework. There are four datasets from three different sources, each containing their source alignment and "true" tree, any estimated trees that may have been generated, and any re-estimated branch lengths that were created to be used with their requisite phylogenetic placement method. Three biological datasets...

SBKS - Chemical Ambiguous Entity Mentions

Jacob Jett
Related to the raw entity mentions (https://doi.org/10.13012/B2IDB-4163883_V1), this dataset represents the effects of the data cleaning process and collates all of the entity mentions which were too ambiguous to successfully link to the ChEBI ontology.

SBKS - Celllines Raw Entity Mentions

Jacob Jett
A set of cell-line entity mentions derived from an NERC dataset analyzing 900 synthetic biology articles published by the ACS. This data is associated with the Synthetic Biology Knowledge System repository (https://web.synbioks.org/). The data in this dataset are raw mentions from the NERC data.

SBKS - Species Ambiguous Entity Mentions

Jacob Jett
Related to the raw entity mentions, this dataset represents the effects of the data cleaning process and collates all of the entity mentions which were too ambiguous to successfully link to the NCBI's taxonomy identifier system.

Data for Responsiveness of Miscanthus and Switchgrass Yields to Stand Age and Nitrogen Fertilization: A Meta-regression Analysis

Bijay P. Sharma, Na Zhang, Lee DoKyoung, Emily Heaton, Evan H. Delucia, Erik J. Sacks, Ilsa B. Kantola, Nicholas N. Boersma, Stephen P. Long, Thomas B. Voigt & Madhu Khanna
The compiled datasets include plot level observations of energy crops (miscanthus and switchgrass) from recent experimental field trials in the US including dry biomass yield, location, state, region, harvest year, growing season degree days (GDD), winter season heating degree days (HDD), growing season cumulative precipitation, annual nitrogen application rate, age of the pant when harvested, National Commodity Crop Productivity Index (NCCPI) values, and cultivar type (switchgrass) from various published and unpublished sources. The stata codes...

Error Analysis

Khanh Linh Hoang, Jodi Schneider & Yogeshwar Kansara
The data contains a list of articles given low score by the RCT Tagger and an error analysis of them, which were used in a project associated with the manuscript "Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews". Change made in this V3 is that the data is divided into two parts: - Error Analysis of 44 Low Scoring Articles with MEDLINE RCT Publication Type....

Data from Testing a filtering strategy for systematic reviews: Evaluating work savings and recall

Randi Proescholdt, Tzu-Kun Hsiao, Jodi Schneider, Aaron Cohen, Marian McDonagh & Neil Smalheiser
This dataset contains the files used to perform the work savings and recall evaluation in the study titled "Data from Testing a filtering strategy for systematic reviews: Evaluating work savings and recall."

Data for: The 30 Doradus Molecular Cloud at 0.4 pc Resolution with ALMA: Physical Properties and the Boundedness of CO-emitting Structures

Tony Wong, Luuk Oudshoorn, Eliyahu Sofovich, Alex Green, Charmi Shah, Remy Indebetouw, Margaret Meixner, Alvaro Hacar, Omnarayani Nayak, Kazuki Tokuda, Alberto D. Bolatto, Melanie Chevance, Guido De Marchi, Yasuo Fukui, Alec S. Hirschauer, K. E. Jameson, Venu Kalari, Vianney Lebouteiller, Leslie W. Looney, Suzanne C. Madden, Toshikazu Onishi, Julia Roman-Duval, Monica Rubio & A. G. G. M. Tielens
12CO and 13CO emission maps of the 30 Doradus molecular cloud in the Large Magellanic Cloud, obtained with the Atacama Large Millimeter/submillimeter Array (ALMA) during Cycle 7. See the associated article in the Astrophysical Journal, and README file, for details. Please cite the article if you use these data.

Data for \"Generic character of charge and spin density waves in superconducting cuprates\"

Sangjun Lee, Edwin W. Huang, Thomas A. Johnson, Xuefei Guo, Ali A. Husain, Matteo Mitrano, Kannan Lu, Alexander V. Zakrzewski, Gilberto A. de la Pena, Yingying Peng, Hai Huang, Sang-Jun Lee, Hoyoung Jang, Jun-Sik Lee, Young Il Joe, William B. Doriese, Paul Szypryt, Daniel S. Swetz, Songxue Chi, Adam A. Aczel, Gregory J. MacDougall, Steven A. Kivelson, Eduardo Fradkin & Peter Abbamonte
Data for "Generic character of charge and spin density waves in superconducting cuprates". - Neutron scattering data for SDW - RSXS scans of CDW of LESCO x=0.10, 0.125, 0.15, 0.17, 0.20 at various temperatures. - Temperature dependence of CDW peak intensity, correlation length, Qcdw (Lorentzian fit, S(q,T) fit, Landau-Ginzburg fit) - XAS data of LESCO x=0.10, 0.125, 0.15, 0.17, 0.20

Codes for the analysis of an eco-immunological disease-transmission mathematical model

Zoi Rapti, Vanessa Rivera Quinones & Tara Stewart Merrill
MATLAB files for the analysis of an ODE model for disease transmission. The codes may be used to find equilibrium points, study transient dynamics, evaluate the basic reproductive number (R0), and simulate the model when parameters depend on the independent variables. In addition, the codes may be used to perform local sensitivity analysis of R0 on the model parameters.

SBKS - Chemical Raw Entity Mentions

Jacob Jett
A set of chemical entity mentions derived from an NERC dataset analyzing 900 synthetic biology articles published by the ACS. This data is associated with the Synthetic Biology Knowledge System repository (https://web.synbioks.org/). The data in this dataset are raw mentions from the NERC data.

SBKS - Species - Cleaned & Grounded Entity Mentions

Jacob Jett
This dataset represents the results of manual cleaning and annotation of the entity mentions contained in the raw dataset (https://doi.org/10.13012/B2IDB-4950847_V1). Each mention has been consolidated and linked to an identifier for a matching concept from the NCBI's taxonomy database.

SBKS - Species Raw Entity Mentions

Jacob Jett
A set of species entity mentions derived from an NERC dataset analyzing 900 synthetic biology articles published by the ACS. This data is associated with the Synthetic Biology Knowledge System repository (https://web.synbioks.org/). The data in this dataset are raw mentions from the NERC data.

Data for The Orinoco Low-level Jet and the Cross-Equatorial Moisture Transport over tropical South America: Lessons from seasonal WRF simulations

Francina Dominguez
This dataset contains results from WRF simulations over northern South America. The Orinoco Low-Level Jet (OLLJ) and the Cross-Equatorial Moisture Transport are important circulation structures of the climate of tropical South America. We explore the sensitivity of the OLLJ and cross-equatorial transport to the representation of surface fluxes and turbulence by using two different Land Surface Model (LSM) schemes (Noah and CLM) and three Planetary Boundary Layer (PBL) schemes (YSU, QNSE and MYNN).

Registration Year

  • 2022
    76

Resource Types

  • Dataset
    76

Affiliations

  • University of Illinois
    73