411 Works

Data from: \"Ecological characteristics and in situ genetic associations for yield-component traits of wild Miscanthus from eastern Russia\"

Lindsay V. Clark, Elena Dzyubenko, Nikolay Dzyubenko, Larisa Bagmet, Andrey Sabitov, Pavel Chebukin, Douglas A. Johnson, Jens Bonderup Kjeldsen, Karen Koefoed Petersen, Uffe Jørgensen, Ji Hye Yoo, Kweon Heo, Chang Yeon Yu, Hua Zhao, Xiaoli Jin, Junhua Peng, Toshihiko Yamada & Erik J. Sacks
Datasets and R scripts relating to the manuscript "Ecological characteristics and in situ genetic associations for yield-component traits of wild Miscanthus from eastern Russia" published in Annals of Botany, 10.1093/aob/mcw137. Field data, including collection locations, physical and ecological information for each location, and plant phenotypes relating to biomass are included. Genetic data in this repository include single nucleotide polymorphisms (SNPs) derived from restriction site-associated DNA sequencing (RAD-seq), as well as plastid microsatellites. A file is...

HIPPI Dataset

Nam-phuong Nguyen, Mike Nute, Siavash Mirarab & Tandy Warnow
This archive contains all the alignments and trees used in the HIPPI paper [1]. The pfam.tar archive contains the PFAM families used to build the HMMs and BLAST databases. The file structure is: ./X/Y/initial.fasttree ./X/Y/initial.fasta where X is a Pfam family, Y is the cross-fold set (0, 1, 2, or 3). Inside the folder are two files, initial.fasta which is the Pfam reference alignment with 1/4 of the seed alignment removed and initial.fasttree, the FastTree-2...

Pollen and climate data from Haselhorst et al. (2017) Ecological Informatics: Table S2. Raw pollen counts and climatic data for each seasonal sampling period

Derek S. Haselhorst, David K. Tcheng, J. Enrique Moreno & Surangi W. Punyasena
Table S2. Raw pollen counts and climatic data for each seasonal sampling period. Climatic data reflects the average daily conditions observed over the duration samples were collected (˚C/day, mm/day, MJ/m2/day). Lycopodium counts and counts for each pollen taxon reflect the aggregated pollen sum from four sampling heights.

Pollen types from Haselhorst et al. (2017) Ecological Informatics: Table S1. Pollen types identified in the BCI and PNSL pollen rain data sets

Derek S Haselhorst, David K. Tcheng, J. Enrique Moreno & Surangi W. Punyasena
Table S1. Pollen types identified in the BCI and PNSL pollen rain data sets. Pollen types were identified to species when possible and assigned a life form based on descriptions provided in Croat, T.B. (1978). Taxa from BCI and PNSL were assigned a 1 if present in forest census data or a 0 if absent. The relative representation of each taxon has been provided for each extended record and by dry and wet season representation...

Targeted ballet program mitigates ataxia and improves agility in moderate-to-advanced multiple sclerosis

Andrew Scheidler, Dominique Kinnett-Hopkins, Yvonne Learmonth, Robert Motl & Citlali Lopez-Ortiz
TBP assessment raw data files of pre- and post- motion capture velocity and center of pressure force plate data. Labels are self-explanatory. The .mat files refer to data exported from the force plate for the time-to-stabilization assessments while the .txt files are the data collected for smoothness of gait assessments. These files do not relate to one another and are from separate assessments. Note: there are some .txt files contain wide white space between data...

Next-gen sequencing and metadata analyses of Great Lakes fungal data.

Andrew N. Miller
The data set consists of Illumina sequences derived from 48 sediment samples, collected in 2015 from Lake Michigan and Lake Superior for the purpose of inventoring the fungal diversity in these two lakes. DNA was extracted from ca. 0.5g of sediment using the MoBio PowerSoil DNA isolation kits following the Earth Microbiome protocol. PCR was completed with the fungal primers ITS1F and fITS7 using the Fluidigm Access Array. The resulting amplicons were sequenced using the...

Data from: Magnetic response of brickwork artificial spin ice

Jungsik Park, Brian Le, Joseph Sklenar, Gia-wei Chern, Justin Watts & Peter Schiffer
Transport and MFM data of brickwork artificial spin ice composed of permalloy are included, which are reproductions of the data in an article named "Magnetic response of brickwork artificial spin ice". Transport data represent magnetic response of connected brickwork artificial spin ice, and MFM data represent how both connected and disconnected brickwork artificial spin ice react to external magnetic fields. SEM images of typical samples are included, where individual nanowire leg (island) is approximately 660...

Data for \"Ammonia Flux Measurements above a Corn Canopy using Relaxed Eddy Accumulation and a Flux Gradient System\"

Andrew J Nelson, Nebila Lichiheb, Sotiria Koloutsou-Vakakis, Mark J. Rood, Mark Heuer, LaToya Myles, Eva Joo, Jesse Miller & Carl Bernacchi
Ammonia flux measurement data using flux gradient and relaxed eddy accumulation methods, and ancillary environmental data collected during the 2014 corn-growing season in Central Illinois, USA. This excel file contains two spreadsheets: one README sheet, and one sheet containing all data. These data were used in the development of the manuscript titled "Ammonia Flux Measurements above a Corn Canopy using Relaxed Eddy Accumulation and a Flux Gradient System."

Castilleja coccinea fruit set and seed set data from Illinois Beach State Park

Eun Sun Kim, David N. Zaya, Jeremie B. Fant & Mary V. Ashley
These data include information on a field experiment on Castilleja coccinea (L.) Spreng., scarlet Indian paintbrush (Orobanchaceae). There is intraspecific variation in scarlet Indian paintbrush in the color of the bracts surrounding the flowers. Two bract color morphs were included in this study, the scarlet and yellow morphs. The experiment was conducted at Illinois Beach State Park in 2012. The aim of the work was to compare the color morphs with regard to 1) self-compatibility,...

Gulf survival capture history

Michael Ward
Data used to estimate the survival of Swainson's Thrushes crossing the Gulf of Mexico.

Soil organic carbon (SOC) response to soil management practices in the continental United States

Carmen M. Ugarte & Michelle M. Wander
This dataset was compiled between 2010 and 2011 from data published in the scientific literature from articles evaluating the influence of cropping systems and soil management practices on soil organic Carbon. We used the Thomas Reuter Web of Science database and by reviewed the reference sections of key peer-reviewed articles. Articles included in the database presented results from field sites within the continental United States.

Data for: Climate, competition, and environment shaped human land use in Late Pleistocene Southeast Asia

Alexandra Zachwieja
Dataset providing calculation of a Competition Index (CI) for Late Pleistocene carnivore guilds in Laos and Vietnam and their relationship to humans. Prey mass spectra, Prey focus masses, and prey class raw data can be used to calculate the CI following Hemmer (2004). Mass estimates were calculated for each species following Van Valkenburgh (1990). Full citations to methodological papers are included as relationships with other resources

Spatial Conservation and Investment Portfolios to Manage Climate-Related Risk

Amy Ando, Jennifer Fraterrigo, Glenn Guntenspergen, Aparna Howlader, Mindy Mallory, Jennifer Olker & Samuel Stickley

Experiment and simulation raw data for \"Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore\"

Hadjer Ouldali, Kumar Sarthak, Tobias Ensslen, Fabien Piguet, Philippe Manivet, Juan Pelta, Jan C. Behrends, Aleksei Aksimentiev & Abdelghani Oukhaled
Raw MD simulation trajectory, input and configuration files, SEM current data, and experimental raw data accompanying the publication, "Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore". README.md contains a description of all associated files.

Bemisia tabaci ortholog set

Robert de Moya
This is the published ortholog set derived from whole genome data used for the analysis of members of the B. tabaci complex of whiteflies. It includes the concatenated alignment and individual gene alignments used for analyses (Link to publication: https://www.mdpi.com/1424-2818/11/9/151).

Network of First and Second-generation citations to Matsuyama 2005 from Google Scholar and Web of Science

Di Ye & Jodi Schneider
Data used for network analyses. deduplicated nodes.csv - List of all nodes in the network. Each node represents a paper. Column headings: ID, Authors, Title, Year Descriptions of column headings: ID - ID for the paper/node. IDs follow the following conventions: - A000 represents the retracted Matsuyama paper. - F### represents a first-generation citation that directly cites the retracted Matsuyama paper. - F###S### represents a second-generation citation that does not cite the retracted Matsuyama paper...

Expert-based measures of human impact to vegetation- Bibliographic analysis

Jack Zinnen, Greg Spyreas, László Erdős, Christian Berg & Jeffrey Matthews
These are text files downloaded from the Web of Science for the bibliographic analyses found in Zinnen et al. (2020) in Applied Vegetation Science. They represent the papers and reference lists from six expert-based indicator systems: Floristic Quality Assessment, hemeroby, naturalness indicator values (& social behaviors), Ellenberg indicator values, grassland utilization values, and urbanity indicator values. To examine data, download VOSviewer and see instructrions from van Eck & Waltman (2019) for how to upload data....

Mixing Data for Three Small Confluences in East Central Illinois

Bruce Rhoads, Quinn Lewis, Alexander Sukhodolov & George Constantinescu
This data set includes information used to determine patterns of mixing at three small confluences in East Central Illinois based on differences in the temperature or turbidity of the two confluent flows.

Data from: Mitochondrial genomes of Columbicola feather lice are highly fragmented, indicating repeated evolution of minicircle-type genomes in parasitic lice

Andrew Sweet, Kevin Johnson & Stephen Cameron
Data files associated with the assembly of mitochondrial minicircles from five species of parasitic lice. This includes data from four species in the genus Columbicola and from the human louse (Pediculus humanus). The files include FASTA sequences for all five species, reference sequences for read mapping approaches, resulting contigs produced by various assembly approaches, and alignments of human louse minicircles mapped to published sequences of the same species.

Heteroptera Transcriptome Set

Robert de Moya
These are the alignments of transcriptome data used for the analysis of members of Heteroptera. This dataset is analyzed in "Deep instability in the phylogenetic backbone of Heteroptera is only partly overcome by transcriptome-based phylogenomics" published in Insect Systematics and Diversity.

Massive Distributed Microphone Array Dataset

Ryan M. Corey, Matthew D. Skarha & Andrew C. Singer
Large, distributed microphone arrays could offer dramatic advantages for audio source separation, spatial audio capture, and human and machine listening applications. This dataset contains acoustic measurements and speech recordings from 10 loudspeakers and 160 microphones spread throughout a large, reverberant conference room. The distributed microphone system contains two types of array: four wearable microphone arrays of 16 sensors each placed near the ears and across the upper body, and twelve tabletop arrays of 8 microphones...

Dataset for \"Channel Activation of CHSH Nonlocality\"

Yujie Zhang, Rodrigo Araiza Bravo, Eric Chitambar & Virginia Lorenz
This dataset provides the raw data, code and related figures for the paper, "Channel Activation of CHSH Nonlocality"

Feather Louse Orthology set

Robert de Moya
This is the data set associated with the manuscript titled "Extensive host-switching of avian feather lice following the Cretaceous-Paleogene mass extinction event." Included are the gene alignments used for phylogenetic analyses and the cophylogenetic input files.

Data from: Mitochondrial genomes of Columbicola feather lice are highly fragmented, indicating repeated evolution of minicircle-type genomes in parasitic lice

Andrew Sweet, Kevin Johnson & Stephen Cameron
Data files associated with the assembly of mitochondrial minicircles from five species of parasitic lice. This includes data from four species in the genus Columbicola and from the human louse (Pediculus humanus). The files include FASTA sequences for all five species, reference sequences for read mapping approaches, resulting contigs produced by various assembly approaches, and alignments of human louse minicircles mapped to published sequences of the same species.

Data for: Anthophilous hover flies (Diptera: Syrphidae) may visually discriminate neonicotinoid insecticides in sucrose solution: a choice experiment

Scott Clem, Taylor Sparbanie, Alec Luro & Alexandra Harmon-Threatt
These data were collected for an experiment examining effects of neonicotinoid (clothianidin) presence on hover fly (Diptera: Syrphidae) behavior. Hover flies of two species (Eristalis arbustorum and Toxomerus marginatus) were offered a choice to feed on artificial flowers laced with sucrose solution that was either contaminated (CLO) or not contaminated (CON) with clothianidin. Two different concentrations of clothianidin in 0.5 M sucrose solution were tested: 2.5 ppb and 150 ppb. We conducted four sets of...

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