618 Works

COPUS observations for NSF WIDER study

Jonathan Tomkin
Sixty undergraduate STEM lecture classes were observed across 14 departments at the University of Illinois Urbana-Champaign in 2015 and 2016. We selected the classes to observe using purposive sampling techniques with the objectives of (1) collecting classroom observations that were representative of the STEM courses offered; (2) conducting observations on non-test, typical class days; and (3) comparing these classroom observations using the Class Observation Protocol for Undergraduate STEM (COPUS) to record the presence and frequency...

All_Words

Xiaoru Dong, Jingyi Xie & Linh Hoang
File Name: AllWords.csv Data Preparation: Xiaoru Dong, Linh Hoang Date of Preparation: 2018-12-12 Data Contributions: Jingyi Xie, Xiaoru Dong, Linh Hoang Data Source: Cochrane systematic reviews published up to January 3, 2018 by 52 different Cochrane groups in 8 Cochrane group networks. Associated Manuscript authors: Xiaoru Dong, Jingyi Xie, Linh Hoang, and Jodi Schneider. Associated Manuscript, Working title: Machine classification of inclusion criteria from Cochrane systematic reviews. Description: The file contains lists of all words...

Constraining a Historical Black Carbon Emission Inventory of U.S. for 1960 to 2000 data

Tianye Sun, Liang Liu, Mark Flanner, Thomas Kirchstetter, Chaoyi Jiao, Chelsea Preble, Wayne Chang & Tami Bond
This dataset contains data used to generate figures and tables in the corresponding paper.

NEXUS data file for phylogenetic analysis of Evacanthinae (Hemiptera: Cicadellidae)

Yang Wang, Christopher Dietrich & Yalin Zhang
The text file contains the original data used in the phylogenetic analyses of Wang et al. (2017: Scientific Reports 7:45387). The text file is marked up according to the standard NEXUS format commonly used by various phylogenetic analysis software packages. The file will be parsed automatically by a variety of programs that recognize NEXUS as a standard bioinformatics file format. The first six lines of the file identify the file as NEXUS, indicate that the...

Inclusion_Criteria_Annotation

Xiaoru Dong, Jingyi Xie & Linh Hoang
File Name: Inclusion_Criteria_Annotation.csv Data Preparation: Xiaoru Dong Date of Preparation: 2019-04-04 Data Contributions: Jingyi Xie, Xiaoru Dong, Linh Hoang Data Source: Cochrane systematic reviews published up to January 3, 2018 by 52 different Cochrane groups in 8 Cochrane group networks. Associated Manuscript authors: Xiaoru Dong, Jingyi Xie, Linh Hoang, and Jodi Schneider. Associated Manuscript, Working title: Machine classification of inclusion criteria from Cochrane systematic reviews. Description: The file contains lists of inclusion criteria of Cochrane...

Frequent pattern subject transactions from the University of Illinois Library (2016 - 2018)

Jim Hahn
The data are provided to illustrate methods in evaluating systematic transactional data reuse in machine learning. A library account-based recommender system was developed using machine learning processing over transactional data of 383,828 transactions (or check-outs) sourced from a large multi-unit research library. The machine learning process utilized the FP-growth algorithm over the subject metadata associated with physical items that were checked-out together in the library. The purpose of this research is to evaluate the results...

Data For: Iron redox reactions can drive microtopographic variation in upland soil carbon dioxide and nitrous oxide emissions

Alexander Krichels
These files contain the data presented in the manuscript entitles "Iron redox reactions can drive microtopographic variation in upland soil carbon dioxide and nitrous oxide emissions".

Influences of fish on food web structure and function in mountain lakes supplemental data

Thomas Detmer
The associated data sets include information on stable isotopes from organic matter sources in high elevation lakes, the percentage of production assimilated from the different sources of organic matter, and the relationship between different metrics for trophic position and environmental variables.

Dramatic long-term restoration of an oak woodland due to multiple, sustained management treatments

Stephen Packard & Greg Spyreas
A 30 year record of the vegetation in sample plots in a woodland in the Chicago area. The changes in these plots over time show how ecological restoration can yield dramatic results.

Global warming effects on nesting in Prothonotary Warblers

Jeffrey Hoover & Wendy Schelsky
Dataset includes temperature data (local average April daily temperatures), first egg dates and reproductive output of Prothonotary Warblers breeding in southernmost Illinois, USA. Also included are arrival dates for warblers returning to breeding grounds from wintering grounds, and global temperature anomaly data for comparison with local temperatures. These data were used in the manuscript entitled "Warmer April Temperatures on Breeding Grounds Promote Earlier Nesting in a Long-Distance Migratory Bird, the Prothonotary Warbler" published in Frontiers...

Simulation Data for JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2

Palash Sashittal, Chuanyi Zhang & Mohammed El-Kebir
This data contains bam files and transcripts in the simulated instances generated for the paper 'JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2' submitted for RECOMB 2021. The folder 'bam' contained the simulated bam files aligned using STAR wile the reads were generated using the method polyester Note: in the readme file, close to the end of the document, please ignore this sentence: 'Those files can be opened by using [name of software].'

Phylogenomics of the North American Plecoptera

Eric J. South, Rachel Skinner, R. Edward DeWalt, Boris Kondratieff, Kevin P. Johnson, Mark Davis, Jonathan Lee & Richard Durfee
This dataset contains the amino acid and nucleotide alignments corresponding to the phylogenetic analyses of South et al. 2020 in Systematic Entomology. This dataset also includes the gene trees that were used as input for coalescent analysis in ASTRAL.

Partial predation of a songbird nest by an Eastern Box Turtle (Terrapene carolina carolina)

Todd M. Jones, Thomas J. Benson & Michael P. Ward
Video footage of an Eastern Box Turtle (Terrapene carolina carolina) partially predating a Field Sparrow nest (Spizella pusilla) at 0845 h on the 31 of May 2020. Please note that the date on the video footage is incorrect due to user error, but the time is correct.

Multiple stem and environmental variables dataset

James W. Dalling & Katherine D. Heineman
Data on permanent plots at Fortuna and the Panama Canal Watershed, Republic of Panama, containing counts and percent of trees with one or more multiple stems >10cm diameter, with and without palms. Accompanying environmental data includes elevation, precipitation, soil type and soil chemical variables (pH, total N, NO3, NO4, resin P, mehlich Ca, K and Mg.

KEEI Kauffman Entrepreneurship Education Inventory Four Year Colleges 2015

This dataset is a snapshot of the presence and structure of entrepreneurship education in U.S. four-year colleges and universities in 2015, including co-curricular activities and related infrastructure. Public, private not-for-profit and for-profit institutions are included, as are specialized four-year institutions. The dataset provides insight into the presence of entrepreneurship education both within business units and in other units of college campuses. Entrepreneurship is defined broadly, to include small business management and related career-focused options.

Mixing Data for Three Small Confluences in East Central Illinois

Bruce Rhoads, Quinn Lewis, Alexander Sukhodolov & George Constantinescu
This data set includes information used to determine patterns of mixing at three small confluences in East Central Illinois based on differences in the temperature or turbidity of the two confluent flows.

Expert-based measures of human impact to vegetation- Bibliographic analysis

Jack Zinnen, Greg Spyreas, László Erdős, Christian Berg & Jeffrey Matthews
These are text files downloaded from the Web of Science for the bibliographic analyses found in Zinnen et al. (2020) in Applied Vegetation Science. They represent the papers and reference lists from six expert-based indicator systems: Floristic Quality Assessment, hemeroby, naturalness indicator values (& social behaviors), Ellenberg indicator values, grassland utilization values, and urbanity indicator values. To examine data, download VOSviewer and see instructrions from van Eck & Waltman (2019) for how to upload data....

The matrix of influence coefficients due to pyramidal distribution on an overlapping hexagonal grid

Yaswanth Sai Jetti & Alison C. Dunn
This data set is a matrix of values. The element in the row "i" and the column "j" denotes the influence of hexagonal pyramidal distribution at node "i" on the node "j". The size of the matrix is 16641x16641. This matrix corresponds to a 129x129 grid. Influence coefficient matrix on a smaller grid can be obtained by appropriately choosing the elements from the bigger matrix.

BEPAM Model Code and CABBI Simulation Results for \"Assessing the Returns to Land and Greenhouse Gas Savings from Producing Energy Crops on Conservation Reserve Program Land\"

Luoye Chen, Elena Blanc-Betes, Tara Hudiburg, Daniel Hellerstein, Steven Wallander, Evan DeLucia & Madhu Khanna
This dataset contains BEPAM model code and input data to the replicate the results for "Assessing the Returns to Land and Greenhouse Gas Savings from Producing Energy Crops on Conservation Reserve Program Land." The dataset consists of: (1) The replication codes and data for the BEPAM model. The code file is named as output_0213-2020_Complete_daycent-agversion-[rental payment level]%_[biomass price].gms. (BEPAM-CRP model-Sep2020.zip) (2) Simulation results from the BEPAM model (BEPAM_Simulation_Results.csv) * Item (1) is in GAMS format. Item...

Gardner Midwest Lyme Invasion Data 102818

Allison Gardner & Brian Allan
These data obtained from the peer-reviewed literature and a public database depict the geographic expansion of the black-legged tick (Ixodes scapularis) and human cases of Lyme disease in the midwestern U.S.

Dataset for: \"A Dual-Frequency Radar Retrieval of Snowfall Properties Using a Neural Network\"

Randy Chase
This is the dataset that accompanies the paper titled "A Dual-Frequency Radar Retrieval of Snowfall Properties Using a Neural Network", submitted for peer review in August 2020. Please see the github for the most up-to-date data after the revision process: https://github.com/dopplerchase/Chase_et_al_2021_NN Authors: Randy J. Chase, Stephen W. Nesbitt and Greg M. McFarquhar Corresponding author: Randy J. Chase (randyjc2@illinois.edu) Here we have the data used in the manuscript. Please email me if you have specific questions...

Data from: Supertree-like methods for genome-scale species tree estimation

Erin K. Molloy
This repository includes scripts and datasets for Chapter 6 of my PhD dissertation, " Supertree-like methods for genome-scale species tree estimation," that had not been published previously. This chapter is based on the article: Molloy, E.K. and Warnow, T. "FastMulRFS: Fast and accurate species tree estimation under generic gene duplication and loss models." Bioinformatics, In press. https://doi.org/10.1093/bioinformatics/btaa444. The results presented in my PhD dissertation differ from those in the Bioinformatics article, because I re-estimated species...

Photosynthetic Performance Measurements in Biomass Sorghum Varietals in Central Illinois during Four Growing Seasons.

Nikhil S. Jaikumar, Samuel Fernandes, Andrew Leakey, Patrick Brown, Sam Stutz, Donald Ort & Stephen Long
In a set of field studies across four years, the effect of self-shading on photosynthetic performance in lower canopy sorghum leaves was studied at sites in Champaign County, IL. Photosynthetic parameters in upper and lower canopy leaves, carbon assimilation, electron transport, stomatal conductance, and activity of three C4-specific photosynthetic enzymes, were compared within a genetically diverse range of accessions varying widely in canopy architecture and thereby in the degree of self-shading. Accessions with erect leaves...

Seedling traits in oak and mix stands

Cecilia M. Prada, Benjamin L. Turner & James W. Dalling
Data from an a field experiment at El Velo, Chiriqui, Republic of Panama. Data contain information about functional traits of seedlings growing in different treatments including type of forest, nitrogen addition and organic matter.

Seven ROSE datasets in high and low fragmentation conditions

Chengze Shen, Minhyuk Park & Tandy Warnow
This is a general description of the datasets included in this upload; details of each dataset can be found in the individual README.txt in each compressed folder. We have: 1. ROSE-HF.tar.gz 2. ROSE-LF.tar.gz HF (high fragmentary): 50% of the sequences are made fragmentary, which have average lengths of 25% of the original lengths with a standard deviation of 60 bp. LF (low fragmentary): 25% of the sequences are made fragmentary, which have average lengths of...

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