107 Works

Dataset for Dense sampling of taxa and characters improves phylogenetic resolution among deltocephaline leafhoppers (Hemiptera: Cicadellidae: Deltocephalinae)

Yanghui Cao, Christopher H. Dietrich, James N. Zahniser & Dmitry A. Dmitriev
The following files were used to reconstruct the phylogeny of the leafhopper subfamily Deltocephalinae, using IQ-TREE v1.6.12 and ASTRAL v 4.10.5. 1) taxon_sampling.csv: contains the sequencing ids (1st column) and the taxonomic information (2nd column) of each sample. Sequencing ids were used in the alignment files and partition files. 2)concatenated_nt.phy: concatenated nucleotide alignment used for the maximum likelihood analysis of Deltocephalinae by IQ-TREE v1.6.12. The file lists the sequences of 163,365 nucleotide positions from 429...

Data for: The Carbon Footprint of Cold Chain Food Flows in the United States

Junren Wang, Deniz Berfin Karakoc & Megan Konar
This dataset is a estimation of county-to-county commodity delivery through cold chain in 2017. For each county pair, the weight[kg] and value[$] of the cold chain flow between origin and destination for SCTG 5 and SCTG 7 commodities are estimated by our model. - SCTG 5 - Meat, poultry, fish, seafood, and their preparations - SCTG 7 - Other prepared foodstuffs, fats, and oils

Data for Evaluating bat boxes: Design and placement alter bioenergetic costs and overheating risk

Reed D. Crawford, Luke E. Dodd, Frank E. Tillman & Joy M. O'Keefe
This dataset contains our bi-hourly temperature recordings from 40 rocket box style artificial roosts of 5 designs deployed in Indiana and Kentucky, USA from April through September 2019. This dataset also includes our endothermic and faculatively heterothermic daily energy expenditure datasets used in our bioenergetic analysis, which were calculated from the bi-hourly rocket box temperature data. Lastly, we include our overheating counts dataset which summarizes daily overheating events (i.e., temperatures > 40 Celsius) in each...

Articles With PubMed Identifiers

Yogeshwar Kansara & Khanh Linh Hoang
The data file contains a list of articles with PMIDs information, which were used in a project associated with the manuscript "Evaluation of publication type tagging as a strategy to screen randomized controlled trial articles in preparing systematic reviews".

Data for Long-lifetime spin excitations near domain walls in 1T-TaS2

Vidya Madhavan & Anuva Aishwarya
The data files are for the paper entitled: Long-lifetime spin excitations near domain walls in 1T-TaS2 to be published in PNAS. The data was obtained on a 300 mK custom designed Unisoku scanning tunneling microscope using the Nanonis module. All the data files have been named based on the Figure numbers that they represent.

Data for Quantifying transportation energy vulnerability and its spatial patterns in the United States.

Shanshan Liu & Eleftheria Kontou
This data set contains all the map data used for "Quantifying transportation energy vulnerability and its spatial patterns in the United States". The multiple dimensions (i.e., exposure, sensitivity, adaptive capacity) of transportation energy vulnerability (TEV) at the census tract level in the United States, the changes in TEV with electric vehicles adoption, and the detailed data for Chicago, Los Angeles, and New York are in the dataset.

Dataset for On the Importance of Firth Bias Reduction in Few-Shot Classification

Ehsan Saleh, Saba Ghaffari, David Forsyth & Wang Yu-Xiong
This data repository includes the features and the trained backbone parameters used in the ICLR 2022 Paper "On the Importance of Firth Bias Reduction in Few-Shot Classification". The code accompanying this data is open-source and available at https://github.com/ehsansaleh/firth_bias_reduction The code and the data have three modules: 1. The "code_firth" module (10 files) relates to the basic ResNet backbones and logistic classifiers (e.g., Figures 2 and 3 in the main paper). 2. The "code_s2m2rf" module (2...

Spatial drivers of wetland bird occupancy within an urbanized matrix in the Upper Midwestern United States

Anastasia Rahlin, Sarah Saunders & Stephanie Beilke
Dataset for "Spatial drivers of wetland bird occupancy within an urbanized matrix in the Upper Midwestern United States" manuscript contains occupancy data for ten wetland bird species used in single-species occupancy models at four spatial scales and four wetland habitat types. Data were collected from 2017-2019 in NE Illinois and NW Indiana. Dataset includes wetland bird occupancy data, habitat parameter values for each survey location, and R code used to run analyses.

Data from: Dynamic occupancy models indicate Black-billed and Yellow-billed Cuckoos have high rates of turnover during the breeding season

Claire A. Johnson & Thomas J. Benson
Data in this publication were used to examine the effects of environmental and temporal covariates on detection probability, and the effects of habitat and landscape level covariates on occupancy and within season turnover of Black-billed Cuckoos and Yellow-billed Cuckoos. Data were collected between 2019-2020 in northern Illinois, USA. Procedures were approved by the Illinois Institutional Animal Care and Use Committee (IACUC), protocol no. 19086.

Data for Refining the role of nitrogen mineralization in mycorrhizal nutrient syndromes

Georgia S. Seyfried, Meghan G. Midgley, Richard Phillips & Wendy Yang
This dataset includes data on soil properties, soil N pools, and soil N fluxes presented in the manuscript, "Refining the role of nitrogen mineralization in mycorrhizal nutrient syndromes". Please refer to that publication for details about methodologies used to generate these data and for the experimental design.

Biological and Simulated datasets for testing the SCAMPP framework for phylogenetic placement methods

Eleanor Wedell & Tandy Warnow
Thank you for using these datasets! These files contain trees and reference alignments, as well as the selected query sequences for testing phylogenetic placement methods against and within the SCAMPP framework. There are four datasets from three different sources, each containing their source alignment and "true" tree, any estimated trees that may have been generated, and any re-estimated branch lengths that were created to be used with their requisite phylogenetic placement method. Three biological datasets...

SBKS - Species Ambiguous Entity Mentions

Jacob Jett
Related to the raw entity mentions, this dataset represents the effects of the data cleaning process and collates all of the entity mentions which were too ambiguous to successfully link to the NCBI's taxonomy identifier system.

SBKS - Chemical Ambiguous Entity Mentions

Jacob Jett
Related to the raw entity mentions (https://doi.org/10.13012/B2IDB-4163883_V1), this dataset represents the effects of the data cleaning process and collates all of the entity mentions which were too ambiguous to successfully link to the ChEBI ontology.

Effect of Micro-patterned Mucin on Quinolone and Rhamnolipid Profiles of Mucoid Pseudomonas aeruginosa under Antibiotic Stress

Dharmeshkumar Parmar, Jin Jia, Joshua Shrout, Jonathan Sweedler & Paul Bohn
#### Details of Pseudomonas aeruginosa biofilm dataset #### ----------------*Folder Structure*------------------------------------- This dataset contains peak intensity tables extracted from mass spectrometry imaging (MSI) data using tools, SCiLS and MSI reader. There are 2 folders in "MSI-Data-Paeruginosa-biofilms-UIUC-DP-JVS-July2022.zip", each folder contains 3 sub-folders as listed below. 1. PellicleBiofilms-and-Supernatant [Pellicle biofilms collected from air-liquid interface and spend supernatant medium after 96 h incubation period]: (1) Full-Scan-Data-96h; (2) MSMS-data-from-C7-Quinolones-96h; and (3) MSMS-data-from-C9-Quinolones-96h 2. StaticBiofilms [Static biofilms grown on mucin surface]:...

SBKS - Celllines Raw Entity Mentions

Jacob Jett
A set of cell-line entity mentions derived from an NERC dataset analyzing 900 synthetic biology articles published by the ACS. This data is associated with the Synthetic Biology Knowledge System repository (https://web.synbioks.org/). The data in this dataset are raw mentions from the NERC data.

Raman spectra of individual, living hematopoietic stem and progenitor cells

Isamar Pastrana-Otero, Sayani Majumdar & Mary L. Kraft
This dataset contains Raman spectra, each acquired from an individual, living, primary murine cell belonging to one of the six most immature hematopoietic cell populations found in the body: hematopoietic stem cell (HSC), mutipotent progenitor 1 (MPP1), multipotent progenitor 2 (MPP2), multipotent progenitor 3 (MPP3), common lymphoid progenitor, common myeloid progenitor (CLP). These spectra are useful for identifying spectral signatures that are characteristic of each hematopoietic stem or early progenitor cell population. *NOTE: __MACOSX folder...

Carcass detection and consumption by facultative scavengers in forest ecosystem highlights the value of their ecosystem services

Akino Inagaki, Maximilian Allen & Shinsuke Koike
Data from an a field survey at Nikko National Park in central Japan. Data contain information about deer carcass, environment of sites, and vertebrate scavenging.

NEXUS file for morphology-based phylogenetic analysis of Membracoidea (Hemiptera: Cicadellidae)

Christopher Dietrich, Dmitry Dmitriev, Daniela Takiya, Michael Thomas, Michael D Webb, James Zahniser & Yalin Zhang
The Membracoidea_morph_data_Final.nex text file contains the original data used in the phylogenetic analyses of Dietrich et al. (Insect Systematics and Diversity, in review). The text file is marked up according to the standard NEXUS format commonly used by various phylogenetic analysis software packages. The file will be parsed automatically by a variety of programs that recognize NEXUS as a standard bioinformatics file format. The complete taxon names corresponding to the 131 genus names listed under...

NEXUS file for Phylogenetic analysis of the Idiocerus genus group (Hemiptera: Cicadellidae)

Qingquan Xue, Qingquan Xue, Christopher H. Dietrich, Christopher H. Dietrich, Yalin Zhang & Yalin Zhang
The text file contains the original DNA nucleotide sequence data used in the phylogenetic analyses of Xue et al. (in review), comprising the 13 protein-coding genes and 2 ribosomal gene subunits of the mitochondrial genome. The text file is marked up according to the standard NEXUS format commonly used by various phylogenetic analysis software packages. The file will be parsed automatically by a variety of programs that recognize NEXUS as a standard bioinformatics file format....

Data for Bats reduce insect density and defoliation in temperate forests: an exclusion experiment

Elizabeth Beilke & Joy O'Keefe
Datasets that accompany Beilke and O'Keefe 2022 publication (Title: Bats reduce insect density and defoliation in temperate forests: an exclusion experiment; Journal: Ecology).

Data for: Economic and Virtual Water Multilayer Networks in China

Junren Wang, Megan Konar, Carole Dalin, Yu Liu, Ashlynn S. Stillwell, Ming Xu & Tingju Zhu
This dataset includes the blue water intensity by sector (41 industries and service sectors) for provinces in China, economic and virtual water network flow for China in 2017, and the corresponding network properties for these two networks.

Simulation setup for \"Percolation transition prescribes protein size-specific barrier to passive transport through the nuclear pore complex.\"

David Winogradoff, Han-Yi Chou, Christopher Maffeo & Aleksei Aksimentiev
Example scripts and configuration files needed to perform select simulations described in the manuscript "Percolation transition prescribes protein size-specific barrier to passive transport through the nuclear pore complex."

Data and code for investigating embryonic death in wild bird eggs

Alexander Di Giovanni & Michael Ward
These data and code are associated with a study on differences in the rate of hatching failure of eggs across 14 free-living grassland and shrubland birds. We used a device to measure the embryonic heart rate of eggs and found there was variation across species related to factors such as nest type and nest safety. This work is to be published in Ornithology.

Data for Responsiveness of Miscanthus and Switchgrass Yields to Stand Age and Nitrogen Fertilization: A Meta-regression Analysis

Bijay P. Sharma, Na Zhang, Lee DoKyoung, Emily Heaton, Evan H. Delucia, Erik J. Sacks, Ilsa B. Kantola, Nicholas N. Boersma, Stephen P. Long, Thomas B. Voigt & Madhu Khanna
The compiled datasets include plot level observations of energy crops (miscanthus and switchgrass) from recent experimental field trials in the US including dry biomass yield, location, state, region, harvest year, growing season degree days (GDD), winter season heating degree days (HDD), growing season cumulative precipitation, annual nitrogen application rate, age of the pant when harvested, National Commodity Crop Productivity Index (NCCPI) values, and cultivar type (switchgrass) from various published and unpublished sources. The stata codes...

Data for: Functional traits and responses to nutrient and mycorrhizal addition are inconsistently related to wetland plant species’ coefficients of conservatism

Jack Zinnen
This is the core data for Zinnen et al., "Functional traits and responses to nutrient and mycorrhizal addition are inconsistently related to wetland plant species’ coefficients of conservatism." This is submitted to Wetlands Ecology and Management. Two datasets are submitted here. The first is greenhouse-collected data of 9 plant traits and concurrent treatment responses of Illinois wetland plant species. The second are field-collected leaf trait data of Illinois wetland plant species. These data are analyzed...

Registration Year

  • 2022
    107

Resource Types

  • Dataset
    107

Affiliations

  • University of Illinois
    101