Fichier de symbologie (format .lyr d'Arcgis) sur l'attribut "occ" de la couche vecteur polygone "EMPyreneesValid_L93_CDDAudreyGrel_DYNAFOR_v24042013.shp"

This sequence dataset (FASTQ format) was obtained by metabarcoding fungal communities of 20-days old leaves in an untreated vineyard located in INRA Vilenave d'Ornon (France). The ribosomal internal transcribed spacer region 1 (ITS1) was amplified with the ITS1F / ITS2 primer pair and sequenced on an Illumina MiSeq platform (v2 chemistry, 500 cycles). "M" samples were collected from leaves harboring symptoms of powdery mildew (Erysiphe necator), while "S" samples were collected from visually healthy leaves....

Metadata file corresponding to all samples

Bioinformatic scripts used to sort, filter and analyze fungal raw sequence data obtained by metabarcoding foliar, bark and ground cover samples collected in an untreated vineyard at INRA Villenave d'Ornon (France). Amplicon sequence variant (ASV) tables obtained for vine leaves and environmental sources (senescing leaves, bark and ground cover).

R script used to filter the raw ASV table corresponding to environmental sources (senescing leaves, bark and ground cover) and generate a phyloseq object

R script used to filter the raw fungal ASV table corresponding to 20-days old grapevine leaves and generate a phyloseq object

Bioinformatic script used to generate the raw fungal ASV table corresponding to environmental microbial sources (senescing leaves, bark, ground cover)

Bioinformatic script used to generate the fungal ASV table corresponding to 20-days old grapevine leaves

Fungal ASV table (phyloseq format) corresponding to environmental microbial sources (senescing leaves, bark, ground cover)

Fungal ASV table (phyloseq format) corresponding to 20-days old grapevine leaves

Hydrological modelling tools developed at INRAE-Antony (HYCAR Research Unit, France). The package includes several conceptual rainfall-runoff models (GR4H, GR5H, GR4J, GR5J, GR6J, GR2M, GR1A), a snow accumulation and melt model (CemaNeige) and the associated functions for their calibration and evaluation. Use help(airGR) for package description and references.